RetrogeneDB ID: | retro_ptro_2917 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 9:120274316..120275095(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1B2 | ||
Ensembl ID: | ENSPTRG00000020040 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.57 % |
Parental protein coverage: | 51.27 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | TGDILRTPVSEDMLGRVFNGSGK-PIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSI |
TGDIL.T.VSEDML..V..GSGK.PIDRGP.VLAEDF.DIMG.P.NP...IYPE.MI.T.ISAI..MNSI | |
Retrocopy | TGDILQTSVSEDMLCWVLVGSGK>PIDRGPLVLAEDFFDIMGWPTNP*RQIYPEDMIRTSISAIVVMNSI |
Parental | A-RGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENG |
A.RG.K.......G.....IAAQIC.Q.GL...SKDV.DY.EENF.IVFAA..VNMETA.FFKS..EENG | |
Retrocopy | A<RGRKFLSSLLLGY-YTKIAAQICHQTGLLNESKDV-DYTEENFPIVFAAKDVNMETAWFFKSGVEENG |
Parental | SMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRG |
SMDN.CLFLNLANDPTI..I..P.L.LTTAEFLAYQ.EKHVLVILTD.SS..EAL.EVS.AREE.PG.RG | |
Retrocopy | SMDNICLFLNLANDPTIG*IVIPHLVLTTAEFLAYQYEKHVLVILTDRSSSTEALQEVSTAREEIPG*RG |
Parental | FPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITH-PIPDLTGYITEGQ |
F.GY.YTDLAT.YE.AGR.EGRNGSITQIP.LT.P..DI.H.PI..LTG....GQ | |
Retrocopy | FTGYTYTDLATLYEHAGRGEGRNGSITQIPTLTTPANDIIH<PISELTGTDLCGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 313 .37 RPM |
SRP007412_cerebellum | 0 .11 RPM | 278 .61 RPM |
SRP007412_heart | 0 .06 RPM | 28 .77 RPM |
SRP007412_kidney | 0 .05 RPM | 182 .28 RPM |
SRP007412_liver | 0 .00 RPM | 37 .58 RPM |
SRP007412_testis | 0 .00 RPM | 245 .44 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4308 |
Gorilla gorilla | retro_ggor_2879 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003668 | 1 retrocopy | |
Homo sapiens | ENSG00000147416 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003888 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001791 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000794 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020040 | 1 retrocopy |
retro_ptro_2917 ,
|
Tarsius syrichta | ENSTSYG00000010477 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013650 | 1 retrocopy |