RetrogeneDB ID: | retro_hsap_4308 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 9:124001285..124002064(-) | ||
Located in intron of: | ENSG00000148180 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214651 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP6V1B2 | ||
Ensembl ID: | ENSG00000147416 | ||
Aliases: | ATP6V1B2, ATP6B1B2, ATP6B2, HO57, VATB, VPP3, Vma2 | ||
Description: | ATPase, H+ transporting, lysosomal 56/58kDa, V1 subunit B2 [Source:HGNC Symbol;Acc:854] |
Percent Identity: | 71.7 % |
Parental protein coverage: | 51.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | TGDILRTPVSEDMLGRVFNGSGK-PIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSI |
TGDIL.T.VSEDML..V..GSGK.PIDRGP.VLAEDF.DIM..P.NPQ..IYPE.MI.T.ISAI.GMNSI | |
Retrocopy | TGDILQTSVSEDMLCWVLVGSGK>PIDRGPLVLAEDFFDIMRWPTNPQRQIYPEDMIRTSISAIVGMNSI |
Parental | A-RGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSKDVVDYSEENFAIVFAAMGVNMETARFFKSDFEENG |
A.RG.K.......G.....IAAQIC.Q.GL...SKDV.DY.EENF.IVFAA..VNMETA.FFKS.FEENG | |
Retrocopy | A<RGRKFLSSLLLGY-YTKIAAQICHQTGLLNESKDV-DYTEENFPIVFAAKDVNMETAWFFKSGFEENG |
Parental | SMDNVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRG |
SMDN.CLFLNLANDPTI..I..P...LTTAEFLAYQ.EKHVLVILTDMSS..EAL.EVS.AREE.PG..G | |
Retrocopy | SMDNICLFLNLANDPTIGWIAIPHPVLTTAEFLAYQYEKHVLVILTDMSSSTEALQEVSTAREEIPG**G |
Parental | FPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITH-PIPDLTGYITEGQ |
F.GY.YTDLATIYE.AGR.EGRNGSITQIP.LTMP..DI.H.PI..LTG....GQ | |
Retrocopy | FTGYTYTDLATIYEHAGRGEGRNGSITQIPTLTMPANDIIH<PISELTGTDLCGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 105 .31 RPM |
bodymap2_adrenal | 0 .00 RPM | 76 .33 RPM |
bodymap2_brain | 0 .00 RPM | 376 .61 RPM |
bodymap2_breast | 0 .00 RPM | 72 .20 RPM |
bodymap2_colon | 0 .00 RPM | 93 .12 RPM |
bodymap2_heart | 0 .00 RPM | 50 .73 RPM |
bodymap2_kidney | 0 .00 RPM | 114 .09 RPM |
bodymap2_liver | 0 .00 RPM | 41 .53 RPM |
bodymap2_lung | 0 .00 RPM | 156 .63 RPM |
bodymap2_lymph_node | 0 .00 RPM | 88 .33 RPM |
bodymap2_ovary | 0 .00 RPM | 86 .82 RPM |
bodymap2_prostate | 0 .00 RPM | 87 .71 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 78 .99 RPM |
bodymap2_testis | 0 .00 RPM | 170 .30 RPM |
bodymap2_thyroid | 0 .00 RPM | 92 .97 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 585 .22 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2917 |
Gorilla gorilla | retro_ggor_2879 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003668 | 1 retrocopy | |
Homo sapiens | ENSG00000147416 | 1 retrocopy |
retro_hsap_4308 ,
|
Gorilla gorilla | ENSGGOG00000003888 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001791 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000794 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000020040 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010477 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013650 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .07 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .03 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .09 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .08 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .06 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .10 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .04 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .06 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .22 RPM |