RetrogeneDB ID: | retro_chof_2602 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_89602:6659..7178(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000002893 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.33 % |
Parental protein coverage: | 56.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | NAYNQEERVVCAGYDNGDIKLFDLRNMSLRWETNIKNGVCSVEFDRKDISMNKLVATSLEGKFHVFDMRT |
NAYNQEERVVCAGYDN.DIKL..LRNMSL.WETNIKNG.CSVEFDRKD.SMNKLVATSLE.KFHVFDMRT | |
Retrocopy | NAYNQEERVVCAGYDNEDIKLSGLRNMSLQWETNIKNGICSVEFDRKDVSMNKLVATSLEVKFHVFDMRT |
Parental | QHPTKGFASVSEKAQKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGMEMGVAGSVSL |
QHPTKGFASVSEKAQKSTVWQVRHLP..RE.FLTAGGAGGLHLWKYEYPIQ.SKKDS.GMEM.VAGSVSL | |
Retrocopy | QHPTKGFASVSEKAQKSTVWQVRHLPHYREFFLTAGGAGGLHLWKYEYPIQWSKKDSKGMEMRVAGSVSL |
Parental | LQNVTLSTQPISSVDWSPDKRGLCVCSSFDQMV |
LQNVTLSTQPISSVDWSPDKRGLCV.SSFDQM. | |
Retrocopy | LQNVTLSTQPISSVDWSPDKRGLCVGSSFDQMI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010619 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002893 | 1 retrocopy |
retro_chof_2602 ,
|
Dipodomys ordii | ENSDORG00000019760 | 1 retrocopy | |
Equus caballus | ENSECAG00000009627 | 1 retrocopy | |
Felis catus | ENSFCAG00000028482 | 1 retrocopy | |
Homo sapiens | ENSG00000221823 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000022682 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000006250 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000026538 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000027562 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000034876 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000041941 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000043210 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000022362 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025985 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000019531 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000021395 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000015522 | 1 retrocopy | |
Drosophila melanogaster | FBgn0015614 | 1 retrocopy |