RetrogeneDB ID: | retro_chof_2631 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_92581:1851..2554(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STX7 | ||
Ensembl ID: | ENSCHOG00000010117 | ||
Aliases: | None | ||
Description: | syntaxin 7 [Source:HGNC Symbol;Acc:11442] |
Percent Identity: | 66.8 % |
Parental protein coverage: | 91.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MSYTPGIGGDPAQ-LAQRISSNIQKITQCSMEIQRTLNQLGTPQDSPELRQQLQQKQQYTNQLAKETDKL |
MS..PGIGGDPA...AQ.ISSN.Q........IQRT.NQ.GTPQ.SP.L.QQL.QKQ...N.LAKET... | |
Retrocopy | MSHPPGIGGDPAR<VAQAISSNTQR--SHTVVIQRTPNQRGTPQASPKLTQQLSQKQKCIN*LAKETETC |
Parental | IKEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTNFQKVQRQAAEREKEFVARVRASSRVSGGFPEDTSKE |
....G..P...S.Q.Q.K.Q....VAEFTTSL...QKVQR...ERE.E.VAR.RASSRVSGGFP.D..KE | |
Retrocopy | TE*LGLFPA--SQQWQSKRQTENSVAEFTTSLMSLQKVQRPPNEREEESVARERASSRVSGGFPGDSPKE |
Parental | RNLVSWESQTQPQVQVQDEEIMED-DLRLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGEVIDSIEA |
RNLVSWE.QTQPQVQV.DEEI.ED..L.LI.ER.SSIRQLEADI.DI..IFKDLGMMIH.QG..IDS.EA | |
Retrocopy | RNLVSWEIQTQPQVQVPDEEITED<SLHLIHERGSSIRQLEADITDISAIFKDLGMMIHQQGDAIDSTEA |
Parental | NTENAEMHVQPANQQLSRAAGYQRKSRKTLC |
N.EN.E..VQ.ANQQLS.AA.YQ.KSRKTLC | |
Retrocopy | NVENSEVPVQQANQQLSGAAAYQCKSRKTLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010117 | 3 retrocopies |
retro_chof_1503, retro_chof_2631 , retro_chof_829,
|
Dasypus novemcinctus | ENSDNOG00000000295 | 1 retrocopy | |
Felis catus | ENSFCAG00000002292 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004301 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014440 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009853 | 1 retrocopy |