RetrogeneDB ID: retro_mluc_494

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: AAPE02070986:308..788(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: STX7
• Ensembl ID: ENSMLUG00000004301
• Aliases: None
• Description: None

Sequence

>retro_mluc_494
AAAGAGTTTGGATCTCTGCCCACCACCACCAGTGAACAGTGTCAAAGGAAAATACAGAAGGATCACTTACTTAACGCTGA
GTTCACATCGCTGACAAACTTTCCGAAGGTCGAGGCAAGTTGATGAGAAATAGAAAGAGTTTGTTGCTCCAGTGGGAGCC
AGTTCAGGAGAATCTGGTAGTTTTCCTGAGGAAAACTCAGAAGAAAGGAATCTTATATCCTGGGAAAACCAAATTCAACC
TCAGGAGCAGGTGCAGGATGAGGAAATTATGGAGGACAACCTTTGCCTTACTCATGTGAGTCTTCTGTTAAGTAATTTGA
AGCTGATATTATGGATATAAATGAGCTATTTAAAGATTTGTGAATGATAATTCAGACGCAAGGAGATGTGATAGATAGCA
TAGAAGGCAAATTTGAAAGTGCAAGAGTGCATGTCCAACAAGCCAACCAGCAACTGTCAAGGGCAGCAGAATATCAAAAA

Alignment

ORF - retro_mluc_494 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.02 %
• Parental protein coverage: 62.31 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KEFGSLPTTPSEQRQRKIQKDRLVAEFTTSLTN-FQKVQRQAAEKEKDFVARVRASSRVSGGFPEESSKD
          KEFGSLPTT.SEQ.QRKIQKD.L.....TSLTN.F....RQ..EK.K.FVA.V.ASS..SG.FPEE.S..
Retrocopy KEFGSLPTTTSEQCQRKIQKDHLLNAEFTSLTN>FRR-SRQVDEK*KEFVAPVGASSGESGSFPEENSEE

Parental  RNLVSWESQTQSQVQVQDDEITEDD-LRLIHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEA
          RNL.SWE.Q.Q.Q.QVQ.DE....D...L....ESS....EADIMDINE.FKDL.M.I..QGDVIDSIE.
Retrocopy RNLISWENQIQPQEQVQ-DEEIMED<QPLPYSCESSVK*FEADIMDINELFKDL*MIIQTQGDVIDSIEG

Parental  NVENAEVHVQQANQQLSRASDYQR
          ..E.A.VHVQQANQQLSRA..YQ.
Retrocopy KFESARVHVQQANQQLSRAAEYQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_494 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010117	3 retrocopies	retro_chof_1503, retro_chof_2631, retro_chof_829,
Dasypus novemcinctus	ENSDNOG00000000295	1 retrocopy	retro_dnov_600,
Felis catus	ENSFCAG00000002292	1 retrocopy	retro_fcat_977,
Myotis lucifugus	ENSMLUG00000004301	1 retrocopy	retro_mluc_494 ,
Sarcophilus harrisii	ENSSHAG00000014440	1 retrocopy	retro_shar_430,
Tursiops truncatus	ENSTTRG00000009853	1 retrocopy	retro_ttru_185,