RetrogeneDB ID: | retro_shar_430 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL842525.1:111547..112126(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | STX7 | ||
Ensembl ID: | ENSSHAG00000014440 | ||
Aliases: | None | ||
Description: | syntaxin 7 [Source:HGNC Symbol;Acc:11442] |
Percent Identity: | 59.8 % |
Parental protein coverage: | 74.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DKYIKEFGSLPTTPSEQRQRKIQKDRLVAEFTASLTNFQKVQRQAAEKEKDFVARVRASSRVSGGFPE-D |
D.YIK.FG.LPTTPS...QRKI.K..L.AEFTASLTN..KVQRQ.AE..............VS..FPE.. | |
Retrocopy | DQYIKDFGPLPTTPSK*YQRKI*KYKLIAEFTASLTNCKKVQRQVAER---VCCQSKSKFQVSSCFPE<G |
Parental | SSKERNLVSWESQTQPQAQLQDEDITEDDLHLIQERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDS |
..KE..L.SW.S.TQ.QA.LQDED..E..LHLI.ERESSIRQLEAD...INEIFK.L...IH.Q.DVIDS | |
Retrocopy | GPKENDLISWPSETQSQAWLQDEDTAEGELHLILERESSIRQLEADRTIINEIFKELAVKIHQQRDVIDS |
Parental | IEANVENAEVHIQQANQQLSRAADYQRKS-RKTLCIILFIVVIGLVILGLILWGSLKKS |
I.AN.....VHIQQAN.QLSR.A.YQ.KS......I.L.IVVI.L...GLI...S.KKS | |
Retrocopy | IKANIDDIKVHIQQANKQLSRTANYQCKS>KTVYIILL-IVVIRLMTVGLIIGRSFKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010117 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000295 | 1 retrocopy | |
Felis catus | ENSFCAG00000002292 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004301 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014440 | 1 retrocopy |
retro_shar_430 ,
|
Tursiops truncatus | ENSTTRG00000009853 | 1 retrocopy |