RetrogeneDB ID: | retro_chof_568 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_122371:2553..3113(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000008668 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.72 % |
Parental protein coverage: | 57.89 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | HCVQLNDGHFMPILGFGTAVPAEVPKTEAEEATKIAI-DAGYRHIDAAYVYENEEEVGRAIRSKIADGTV |
HCV.LNDGH..PIL.FGT...AEVPK.EAEEATK.A..DAG..HIDA..VY.NEEEVG.AI.SK...... | |
Retrocopy | HCV*LNDGHIIPILAFGTGAHAEVPKSEAEEATKLAM<DAGFHHIDATHVYKNEEEVGQAI*SKTVEDIM |
Parental | KREDIFYTSKLWATFFRPELVRPALERSLKKLQLDYMDLYIIHFPLALKPGEDILPMDEHGKCIFDTVDF |
KR.DIFYTSKLW.TFF.PELVRPALERSLKKLQLDY.DLYIIHFP.ALKPGED.LP.DEH.K.IFDTVD. | |
Retrocopy | KRKDIFYTSKLWVTFF*PELVRPALERSLKKLQLDYVDLYIIHFPTALKPGEDLLPKDEHRKYIFDTVDL |
Parental | CATWEALEKCKDAGLTKSIGVSNFNHKQLERILNKPGLKYKPVCNQVE |
CATWEA.EK.KDA.LTKSI.VSNFNHKQLE.ILNKPGLKY.PVCNQVE | |
Retrocopy | CATWEAQEKGKDAALTKSIDVSNFNHKQLEMILNKPGLKYRPVCNQVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000166 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008668 | 1 retrocopy |
retro_chof_568 ,
|
Echinops telfairi | ENSETEG00000009155 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000038361 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000006005 | 1 retrocopy |