RetrogeneDB ID: | retro_rnor_2046 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:31874060..31874690(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RGD1564865 | ||
Ensembl ID: | ENSRNOG00000038361 | ||
Aliases: | RGD1564865, RGD1309566 | ||
Description: | 20-alpha-hydroxysteroid dehydrogenase-like [Source:RefSeq peptide;Acc:NP_001157868] |
Percent Identity: | 69.52 % |
Parental protein coverage: | 71.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YLIHYPISIKPSEEIYTKDENGKILFETVDLCAIWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLK |
YLIH..I.IK.SEEIY.KDENGK.LFE.VDLCA..EA.E..KDAGLAKSI..SNFN...LEM.LNK..L. | |
Retrocopy | YLIHNLILIKSSEEIYAKDENGKVLFEIVDLCAMREALEIYKDAGLAKSIRMSNFNHGKLEMVLNKSELN |
Parental | HRPVCNQVECHPYLNQSKLMDFCKSQDIVLVAYAALGSQRPTNWVDKNAPFLLNDPVLGGMAKKHNRSPA |
..PV..QVECH.YLNQS.L..FCKS.DI.LV.Y.ALGSQ.P..WVDKNAPFLLN.PVL..MAKKHN.SP. | |
Retrocopy | YKPVWDQVECHRYLNQSQLLEFCKSRDIILVVYQALGSQHPITWVDKNAPFLLNSPVLCAMAKKHNQSPT |
Parental | QIALRYQVQRGVVALAQTYEQKEMKENIQVFEFQLPSEDMEVLDGLNRNFRYFPVNIAAEHPNYPYSDDY |
QIALRYQVQ.GVVALA..YE..EM.ENI.VFEFQ.P.E...V.DGLNR.FR.FPV.IAA.HP..P....Y | |
Retrocopy | QIALRYQVQHGVVALAHSYEENEMQENI*VFEFQSPLENLAVRDGLNRRFRSFPVDIAAGHPSFPFFNGY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 116 .05 RPM |
SRP017611_liver | 0 .00 RPM | 1 .28 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008668 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009155 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009513 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000009734 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013004 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017165 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000038361 | 1 retrocopy |
retro_rnor_2046 ,
|
Sarcophilus harrisii | ENSSHAG00000006005 | 1 retrocopy |