RetrogeneDB ID:

retro_chof_660

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_132649:3437..3806(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSCHOG00000004265
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:MOB1B
Ensembl ID:ENSCHOG00000012418
Aliases:None
Description:MOB kinase activator 1B [Source:HGNC Symbol;Acc:29801]


Retrocopy-Parental alignment summary:






>retro_chof_660
GAGTATCATTGGGTAGATGGTACTAATATTAAAAAGCCAATCAAATGTTCTGCTCCAAAATACATTGACTATTTGATGAC
TTGGGTTCAAGATCAGCTTGATGATGAAACTCTTTTTCCTTCTAAGATTGGTGTCCCATTTCCCAAAGACTTTATGTCTG
TGACAAACACTATTCAAATGTGTCTGTTCAGGGTTTATGCCCATATTTATCACCAGCAATTTGATTCTGTGATACAGCTG
CAAGAGGAGGCCCATCTCAACACCTCCTTTAAGCACTTTATTTTCTTTGTTCAGGACTTTAATCTGATTGATAGGTGTGA
GTTGGTACCTCTTCAGGAATTAATTGAGAAGCTTGGATCAAAAGACAGA

ORF - retro_chof_660 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.43 %
Parental protein coverage: 58.29 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIY
EYHW.DGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPK.FMSV..TI...LFRVYAHIY
RetrocopyEYHWVDGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKDFMSVTNTIQMCLFRVYAHIY
ParentalHQHFDPVIQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLTSKDR
HQ.FD.VIQLQEEAHLNTSFKHFIFFVQ.FNLIDR.EL.PLQELIEKL.SKDR
RetrocopyHQQFDSVIQLQEEAHLNTSFKHFIFFVQDFNLIDRCELVPLQELIEKLGSKDR

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_660 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000072771 retrocopy
Choloepus hoffmanni ENSCHOG00000012418 3 retrocopies
retro_chof_1124, retro_chof_1337, retro_chof_660 ,
Macropus eugenii ENSMEUG000000142101 retrocopy
Microcebus murinus ENSMICG000000064692 retrocopies
Myotis lucifugus ENSMLUG000000058381 retrocopy
Ochotona princeps ENSOPRG000000091331 retrocopy
Sus scrofa ENSSSCG000000089412 retrocopies
Vicugna pacos ENSVPAG000000118921 retrocopy



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