RetrogeneDB ID: | retro_vpac_35 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1078:157134..157518(-) | ||
Located in intron of: | ENSVPAG00000006406 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MOB1B | ||
Ensembl ID: | ENSVPAG00000011892 | ||
Aliases: | None | ||
Description: | MOB kinase activator 1B [Source:HGNC Symbol;Acc:29801] |
Percent Identity: | 53.91 % |
Parental protein coverage: | 68.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KTFKPKKNIPEGSHQYELLKHAEATLGSG-NLRMAVMLPEGEDLNEWVAVNTVDFFNQINMLYGTITDFC |
KTF.PK.....G....EL.K.A.A.L.SG..L..AV.LP.GED.N.WVAV..VDFFN.IN..YGTI..FC | |
Retrocopy | KTFRPKRKFEPGTQRFELHKRAQASLNSGVDLKAAVQLPSGEDQNDWVAVHVVDFFNRINLIYGTICEFC |
Parental | TEESCPVMSAGPKYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIG |
TE..CPVMS.GPKYEY.W.D....KKP....AP.Y...LM.W...Q...E..FP...G | |
Retrocopy | TERTCPVMSGGPKYEYRWQDDLKYKKPTALPAPQYMNLLMDWIEVQINNEDIFPTCVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012418 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000014210 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006469 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000005838 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000009133 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008941 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011892 | 1 retrocopy |
retro_vpac_35 ,
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