RetrogeneDB ID: | retro_chof_669 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_133455:1911..2336(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB8B | ||
Ensembl ID: | ENSCHOG00000007196 | ||
Aliases: | None | ||
Description: | RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273] |
Percent Identity: | 61.64 % |
Parental protein coverage: | 69.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | VGKTCLLFRFSEDAFNTTFISTIGI-DFKIRTIELDGKKIKLQIWDT-AGQERFRTITTAYYRGAMGIML |
V.K.CL.FRF....FNTTFIST.G...FKI.T..L.G.KIKL.IW...AGQERF.TITT.Y.RGAM..ML | |
Retrocopy | VQKICLRFRFFG*SFNTTFISTVGT<SFKIKTVVLQGMKIKLWIWER<AGQERFHTITTSYDRGAMDSML |
Parental | VYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIK-FLETSAKSS |
VYDI.N.KSF.NIK...RNI.EHA..DVE.M.LGN.CDM.DKR.V.K..GE..A...G...F.ETSAK.. | |
Retrocopy | VYDIINGKSFENIK-*PRNIDEHANEDVESMLLGNTCDMDDKRVVPKGKGEEIAKEHGMR>FFETSAKAN |
Parental | TNVEEA |
.N.E.A | |
Retrocopy | INIEKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007196 | 3 retrocopies |
retro_chof_1996, retro_chof_475, retro_chof_669 ,
|
Dasypus novemcinctus | ENSDNOG00000023965 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000007113 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005217 | 2 retrocopies |