RetrogeneDB ID:

retro_chof_669

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_133455:1911..2336(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAB8B
Ensembl ID:ENSCHOG00000007196
Aliases:None
Description:RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273]


Retrocopy-Parental alignment summary:






>retro_chof_669
GTGCAGAAGATCTGCCTCCGTTTTCGTTTTTTTGGATGATCCTTCAATACCACCTTTATTTCCACCGTAGGAACAGCTTT
AAGATCAAAACAGTTGTATTACAAGGAATGAAGATCAAGCTATGGATATGGGAAAGGCAGGCCAGGAGCGATTTCACACC
ATCACAACCTCTTATGACAGAGGAGCTATGGATAGCATGCTAGTATATGACATCATAAATGGTAAAAGTTTTGAAAACAT
TAAATAGCCTAGAAATATAGATGAGCATGCCAATGAAGATGTGGAAAGCATGTTACTAGGAAACACATGTGATATGGATG
ATAAAAGAGTTGTACCTAAAGGAAAAGGAGAAGAGATTGCAAAGGAGCATGGTATGAGATTTTTTTGAGACTAGTGCAAA
AGCAAATATAAACATCGAGAAGGCA

ORF - retro_chof_669 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 61.64 %
Parental protein coverage: 69.08 %
Number of stop codons detected: 2
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalVGKTCLLFRFSEDAFNTTFISTIGI-DFKIRTIELDGKKIKLQIWDT-AGQERFRTITTAYYRGAMGIML
V.K.CL.FRF....FNTTFIST.G...FKI.T..L.G.KIKL.IW...AGQERF.TITT.Y.RGAM..ML
RetrocopyVQKICLRFRFFG*SFNTTFISTVGT<SFKIKTVVLQGMKIKLWIWER<AGQERFHTITTSYDRGAMDSML
ParentalVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIK-FLETSAKSS
VYDI.N.KSF.NIK...RNI.EHA..DVE.M.LGN.CDM.DKR.V.K..GE..A...G...F.ETSAK..
RetrocopyVYDIINGKSFENIK-*PRNIDEHANEDVESMLLGNTCDMDDKRVVPKGKGEEIAKEHGMR>FFETSAKAN
ParentalTNVEEA
.N.E.A
RetrocopyINIEKA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_669 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 9 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000007196 3 retrocopies
retro_chof_1996, retro_chof_475, retro_chof_669 ,
Dasypus novemcinctus ENSDNOG000000239653 retrocopies
Microcebus murinus ENSMICG000000071131 retrocopy
Sorex araneus ENSSARG000000052172 retrocopies



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