RetrogeneDB ID: | retro_sara_725 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_36009:23..284(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB8B | ||
Ensembl ID: | ENSSARG00000005217 | ||
Aliases: | None | ||
Description: | RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273] |
Percent Identity: | 72.41 % |
Parental protein coverage: | 52.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSSSSGAGGPVK |
N...M......SK.R..KLAIDYG.KFL.TSA.SSTNVEE.F..LA.DIMTKLNRK.NDS.S.GAGGPVK | |
Retrocopy | NDIGMTKDKCPSK*RRGKLAIDYGMKFLKTSANSSTNVEEVFLALA*DIMTKLNRKINDSNSTGAGGPVK |
Parental | ITENRSKKTSFFRCSLL |
ITEN.SKKTSFF.CSLL | |
Retrocopy | ITENWSKKTSFFHCSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007196 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000023965 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000007113 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005217 | 2 retrocopies |
retro_sara_366, retro_sara_725 ,
|