RetrogeneDB ID:

retro_dnov_23

Retrocopy
location
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_208303:1423..1801(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSDNOG00000000115
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RAB8B
Ensembl ID:ENSDNOG00000023965
Aliases:None
Description:RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273]


Retrocopy-Parental alignment summary:






>retro_dnov_23
GGAATTATGCTGGTCTATGACATCACAAATGAAAAATCCTTTGACAATATTAAAAATTGGATAAGAAACATTGAAGAGCA
TGCCTCTTCAGATGTTGAAAGAATGATCCTGGGTAACAAATGTGATATGAATGACAAAAGACAAGTATCAAAAGAAAGAG
GGGAGAAGTTAGCAATTGACTACGGGATTAAATTCTTGGAGACAAGTGCAAAATCCAGTACAAATGTAGAAGAGGCATTT
TTTACACTTGCACGAGATATAATGACAAAACTCAACCGAAAAATGAATGACAGCAATTCATCAGGAGCAGGTGGACCAGT
GAAAATAACAGAAAATCGATCAAAGAAGACCAGTTTCTTCCGTTGTTCACTACTCTGA

ORF - retro_dnov_23 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 62.5 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA
GIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA
RetrocopyGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA
ParentalKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRSKKTSFFRCSLL
KSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRSKKTSFFRCSLL
RetrocopyKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRSKKTSFFRCSLL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP012922_ascending_colon 0 .78 RPM 3 .89 RPM
SRP012922_cerebellum 0 .27 RPM 2 .34 RPM
SRP012922_heart 0 .23 RPM 1 .16 RPM
SRP012922_kidney 0 .00 RPM 1 .10 RPM
SRP012922_liver 0 .15 RPM 0 .31 RPM
SRP012922_lung 0 .76 RPM 3 .21 RPM
SRP012922_quadricep_muscle 0 .00 RPM 0 .87 RPM
SRP012922_spleen 2 .75 RPM 7 .10 RPM
Dasypus novemcinctus was not studied using ChIP-Seq data.
Dasypus novemcinctus was not studied using EST data.
Dasypus novemcinctus was not studied using FANTOM5 data.
retro_dnov_23 was not experimentally validated.

Retrocopy orthology:
Dasypus novemcinctus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000071963 retrocopies
Dasypus novemcinctus ENSDNOG00000023965 3 retrocopies
retro_dnov_1191, retro_dnov_1981, retro_dnov_23 ,
Dasypus novemcinctus ENSDNOG000000250471 retrocopy
Microcebus murinus ENSMICG000000071131 retrocopy
Sorex araneus ENSSARG000000052172 retrocopies



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