RetrogeneDB ID: | retro_cjac_1511 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 16:38555549..38556416(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000023197 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PNP | ||
Ensembl ID: | ENSCJAG00000009676 | ||
Aliases: | None | ||
Description: | purine nucleoside phosphorylase [Source:HGNC Symbol;Acc:7892] |
Percent Identity: | 98.96 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MENGYTYEDYKNTAEWLLSHTKHRPQVAVICGSGLGGLTDKLTQAQAFDYSEIPNFPRSTVPGHAGRLVF |
MENGYTYEDYKNTAEWLLSHTKHRPQVA.ICGSGLGGLTDKLTQAQAFDYSEIPNFPRSTVPGHAGRLVF | |
Retrocopy | MENGYTYEDYKNTAEWLLSHTKHRPQVAIICGSGLGGLTDKLTQAQAFDYSEIPNFPRSTVPGHAGRLVF |
Parental | GFLNGRACVMMQGRFHMYEGYSLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLICDHINLPG |
GFLNGRACVMMQGRFHMYEGYSLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLICDHINLPG | |
Retrocopy | GFLNGRACVMMQGRFHMYEGYSLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLICDHINLPG |
Parental | FSGQNPLRGPNDERFGVRFPAMSDAYDRTMRQRALSAWKQMGEKRELQEGTYVMLAGPSFETVAECRLLQ |
FSGQNPLRGPNDERFGVRFPAMSDAYDRTMRQRALSAWKQMGEKRELQEGTYVMLAGPSFETVAEC.LLQ | |
Retrocopy | FSGQNPLRGPNDERFGVRFPAMSDAYDRTMRQRALSAWKQMGEKRELQEGTYVMLAGPSFETVAECLLLQ |
Parental | KLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVILDYESLEKANHEEVLEASKQAAQKLERFVSILMS |
KLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVILDYESLEKANHEEVLE.SKQAAQKLERFVSILMS | |
Retrocopy | KLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVILDYESLEKANHEEVLEVSKQAAQKLERFVSILMS |
Parental | SIPLPDKAS |
SIPLPDKAS | |
Retrocopy | SIPLPDKAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 7 .39 RPM |
SRP051959_heart | 0 .00 RPM | 3 .07 RPM |
SRP051959_kidney | 0 .84 RPM | 294 .52 RPM |
SRP051959_liver | 0 .00 RPM | 1 .58 RPM |
SRP051959_lung | 0 .02 RPM | 8 .65 RPM |
SRP051959_lymph_node | 0 .02 RPM | 11 .37 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 2 .05 RPM |
SRP051959_spleen | 0 .02 RPM | 7 .75 RPM |