Parental gene:

ENSSTOG00000023525

Aliases:None
Description:None
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393390.1:3860803..3876952(-)


>ENSSTOG00000023525
GCTGAGGCTGAGGTAGCCTCCTTGAACCGAAGGATCCAACTGGTTGAAGAGGAGCTGGACCGTGCTCAGGAGCGCCTTGC
TACTGCCCTGCAAAAGCTGGAGGAAGCAGAAAAAGCTGCTGATGAGAGTGAGAGGTGTATGAAGGTTATTGAAAACCGGG
CCCTAAAAGATGAAGAAAAGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAAGCAGATAGG
AAGTATGAAGAGGTGGCTCGTAAGTTAGTGATTATTGAAGGAGACTTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGA
GTCCCGTTGCCGAGAGATGGATGAGCAGATCAGACTGATGGACCAGAACCTGAAGTGTCTGAATGCTGCTGAAGAAAAGT
ACTCTCAAAAAGAAGACAAATATGAGGAAGAAATAAAGATTCTCACTGATAAACTCAAGGAGGCAGAGACCCGCGCTGAG
TTTGCCGAGAGATCGGTAGCCAAACTGGAAAAGACAATTGATGATTTGGAAGATAAGCTGAAATGCACCAAAGAGGAGCA
CCTCTGTACACAAAGGATGCTGGACCAGACTCTGCTTGACCTGAATGAGATGTAG

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009747 possible_ortholog 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Gorilla gorilla ENSGGOG00000012668 possible_ortholog 3 retrogenes
retro_ggor_1239, retro_ggor_1817, retro_ggor_2621,
Nomascus leucogenys ENSNLEG00000010990 possible_ortholog 8 retrogenes
retro_nleu_1133, retro_nleu_2050, retro_nleu_2119, retro_nleu_2141, retro_nleu_2387, retro_nleu_2523, retro_nleu_921, retro_nleu_922,
Pongo abelii ENSPPYG00000000787 possible_ortholog 2 retrogenes
retro_pabe_1230, retro_pabe_3263,
Rattus norvegicus ENSRNOG00000017441 possible_ortholog 1 retrogene
retro_rnor_1524,
Sus scrofa ENSSSCG00000006556 possible_ortholog 3 retrogenes
retro_sscr_318, retro_sscr_604, retro_sscr_781,
Ictidomys tridecemlineatus ENSSTOG00000009955 within_species_paralog 1 retrogene
retro_itri_166,
Ictidomys tridecemlineatus ENSSTOG00000024252 within_species_paralog 1 retrogene
retro_itri_1858,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_231 85.59 54.41
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2. retro_itri_674 96.59 100.00
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3. retro_itri_709 95.59 100.00
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4. retro_itri_1453 95.57 99.51
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5. retro_itri_1558 59.09 52.94
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6. retro_itri_1837 81.02 65.69
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Download FASTA sequences of all ENSSTOG00000023525 retrocopies