Parental gene:

DKFZP459K1410, ENSPPYG00000000787

Aliases:None
Description:tropomyosin alpha-3 chain [Source:RefSeq peptide;Acc:NP_001126994]
Organism:Orangutan (Pongo abelii)
Coordinates:1:97321018..97348539(+)


>ENSPPYG00000000787
ATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCG
AGCTGAGCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAACGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCG
GAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAAAAGATGGAACT
CCAGGAAATCCAGCTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATCATTGAAGGAGACTTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGAGTCTAAGTGTTCTGAGCTGGAGGAGGAG
CTGAAGAATGTCACCAACAACCTCAAGTCTCTTGAGGCTCAGGCGGAGAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAAATCAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGACTTGGAAGATAAACTGAAATGCACCAAAGAGGAGCACCTCTGTACACAAAGGATGCTGGACCAG
ACCCTGCTTGACCTGAATGAGATGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 202 .03 RPM
SRP007412_cerebellum 68 .95 RPM
SRP007412_heart 28 .30 RPM
SRP007412_kidney 97 .22 RPM
SRP007412_liver 59 .12 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009747 possible_ortholog 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Gorilla gorilla ENSGGOG00000012668 possible_ortholog 3 retrogenes
retro_ggor_1239, retro_ggor_1817, retro_ggor_2621,
Nomascus leucogenys ENSNLEG00000010990 possible_ortholog 8 retrogenes
retro_nleu_1133, retro_nleu_2050, retro_nleu_2119, retro_nleu_2141, retro_nleu_2387, retro_nleu_2523, retro_nleu_921, retro_nleu_922,
Otolemur garnettii ENSOGAG00000025133 possible_ortholog 1 retrogene
retro_ogar_62,
Pongo abelii ENSPPYG00000006534 within_species_paralog 1 retrogene
retro_pabe_624,
Rattus norvegicus ENSRNOG00000017441 possible_ortholog 1 retrogene
retro_rnor_1524,
Sus scrofa ENSSSCG00000006556 possible_ortholog 3 retrogenes
retro_sscr_318, retro_sscr_604, retro_sscr_781,
Ictidomys tridecemlineatus ENSSTOG00000023525 possible_ortholog 6 retrogenes
retro_itri_1453, retro_itri_1558, retro_itri_1837, retro_itri_231, retro_itri_674, retro_itri_709,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1230 84.00 79.84
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2. retro_pabe_3263 76.43 56.05
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Download FASTA sequences of all ENSPPYG00000000787 retrocopies