RetrogeneDB ID: | retro_cjac_1870 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 2:167152035..167152498(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ISCA1 | ||
Ensembl ID: | ENSCJAG00000001940 | ||
Aliases: | None | ||
Description: | iron-sulfur cluster assembly 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:28660] |
Percent Identity: | 87.34 % |
Parental protein coverage: | 88.64 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | QCARLVHGERLGLPSFGPRHQGAETAKMSASLVRATVRA-VSKRKLQPTRAALTLTPAAVNKIKQLLKDK |
.CAR.VH.ERL.LPSFGPR.Q.A.T.KMSASLV.ATVRA.V.KRKLQPTRAAL.LTP.AVNKIK.LLKDK | |
Retrocopy | ECARCVHEERLRLPSFGPRDQRAWTVKMSASLVQATVRA<VNKRKLQPTRAALALTPSAVNKIKKLLKDK |
Parental | PEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIE-KKAQLTLLGTEMDYVEDKLSSEFV |
PEHVGVKVGVRTRGCNGLSYT.EYTKTKGDSD.EVIQDGVRVFIE.KKAQ.TLLGTE.DY.EDKLSSEFV | |
Retrocopy | PEHVGVKVGVRTRGCNGLSYTPEYTKTKGDSD-EVIQDGVRVFIE<KKAQRTLLGTERDYAEDKLSSEFV |
Parental | FNNPNIKGTCGCGESFNI |
FNNPNIKGTCGCGESFNI | |
Retrocopy | FNNPNIKGTCGCGESFNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 9 .03 RPM |
SRP051959_heart | 0 .04 RPM | 22 .63 RPM |
SRP051959_kidney | 0 .04 RPM | 21 .76 RPM |
SRP051959_liver | 0 .00 RPM | 18 .78 RPM |
SRP051959_lung | 0 .00 RPM | 12 .44 RPM |
SRP051959_lymph_node | 0 .05 RPM | 10 .39 RPM |
SRP051959_skeletal_muscle | 0 .02 RPM | 32 .41 RPM |
SRP051959_spleen | 0 .00 RPM | 35 .00 RPM |