RetrogeneDB ID: | retro_cpor_768 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_27:15163670..15163905(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ISCA1 | ||
Ensembl ID: | ENSCPOG00000011872 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.31 % |
Parental protein coverage: | 61.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | ASLVRATVRAVSKRKLQPTRAALTLTPSAVNKIKQLLQDKPEHVGLKV-GVRTRGCNGLSYTLEYTKTKG |
ASLVRATV.AVSKRKLQPT.A.L..TPSAVNK.K.L..DKP.HVGLK...V..RGCN.LSY.LEYTKTKG | |
Retrocopy | ASLVRATVQAVSKRKLQPTCATLMRTPSAVNKMKHLPKDKPGHVGLKA<CV*IRGCNSLSYPLEYTKTKG |
Parental | DS-DEEVVQDG |
DS..EEVVQ.G | |
Retrocopy | DS<CEEVVQGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 50 .33 RPM |
SRP017611_kidney | 0 .00 RPM | 69 .09 RPM |
SRP017611_liver | 0 .00 RPM | 49 .40 RPM |
SRP040447_lung | 0 .08 RPM | 29 .63 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 64 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000046526 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000001940 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000011872 | 2 retrocopies |
retro_cpor_1383, retro_cpor_768 ,
|
Dasypus novemcinctus | ENSDNOG00000010652 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000016537 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007518 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000003889 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000003559 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044792 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015628 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000019339 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000018343 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000012826 | 2 retrocopies |