RetrogeneDB ID: | retro_cjac_333 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 1:8640758..8641310(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000022869 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000014728 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.51 % |
Parental protein coverage: | 94.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SCSSPSRDCSGVPVSRELLTTGSDGRGGLWDRLLINPQPKSRKTSTLQTVRIERSPLLDQVQTFLPQMAQ |
SCSSP..DCSG.PVSRELLT.G.DG.GG.WDR..INPQPKSRKTST.QTVRIERSPLL.QVQTF.PQMAQ | |
Retrocopy | SCSSPCPDCSGLPVSRELLTAGCDGHGGIWDRSFINPQPKSRKTSTIQTVRIERSPLLGQVQTFVPQMAQ |
Parental | ANEKLRKEMAAAPPGRFNIENIDGTHGKVIQMDVALFEMNRSDSKEADSSEESSQDSSENSSESEDEDDS |
ANEKLRKEMAAA.PGRFNIENIDGTHGKVIQ.DVA.FEMN.SDSKE.DSS.ESSQDSSENSSESEDED.S | |
Retrocopy | ANEKLRKEMAAALPGRFNIENIDGTHGKVIQTDVAQFEMNQSDSKEVDSSGESSQDSSENSSESEDEDES |
Parental | IPSEVTIDNIKLPNSEGGKGKIEVLDSPASKKKK |
IPSEVTIDNIKLPNSEGGKGKIEVLDSPAS.KKK | |
Retrocopy | IPSEVTIDNIKLPNSEGGKGKIEVLDSPASIKKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .40 RPM | 3 .62 RPM |
SRP051959_heart | 0 .39 RPM | 4 .47 RPM |
SRP051959_kidney | 0 .07 RPM | 6 .26 RPM |
SRP051959_liver | 4 .33 RPM | 5 .05 RPM |
SRP051959_lung | 0 .24 RPM | 5 .43 RPM |
SRP051959_lymph_node | 0 .07 RPM | 10 .25 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 3 .54 RPM |
SRP051959_spleen | 0 .19 RPM | 8 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000014728 | 1 retrocopy |
retro_cjac_333 ,
|
Dasypus novemcinctus | ENSDNOG00000017235 | 1 retrocopy | |
Homo sapiens | ENSG00000151131 | 1 retrocopy | |
Gallus gallus | ENSGALG00000012694 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027272 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017133 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004897 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000005381 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000027792 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000005714 | 1 retrocopy |