RetrogeneDB ID: | retro_cpor_1160 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_51:2294604..2294902(+) | ||
Located in intron of: | ENSCPOG00000000083 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.35 % |
Parental protein coverage: | 52.06 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SVYA-HFPINVVIQENGSLVEIRNFLGEKYIRRVRMRAVGVACSVSQAQKDELILEGNDIELVSNSVAAL |
SVY..H.P...VIQ.NG.LV.I.N.LGEK.I.....R..GVACSVSQA.K.ELILEG.DIEL.SNS.AAL | |
Retrocopy | SVYV*HLPVDIVIQKNGFLVAIWNLLGEKCIYQFH-RSTGVACSVSQAHKEELILEGTDIELISNS-AAL |
Parental | IQQATTVK-NKDIRKFLDGIYVSEKGTVQ-QPDE |
IQQ..TVK.NKDIRK.L..IY.SEK..VQ..PDE | |
Retrocopy | IQQSITVK<NKDIRKILNAIYISEKEAVQ<VPDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 197 .34 RPM |
SRP017611_liver | 0 .00 RPM | 143 .12 RPM |
SRP040447_lung | 0 .00 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 206 .16 RPM |