RetrogeneDB ID: | retro_cpor_665 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_22:2688992..2689357(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.8 % |
Parental protein coverage: | 63.92 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWG-NRKELAT |
.K...S..TVD...N...T.KG.TV.....RG.L..DFNH.NVELSLLG.....L..D..WG.NRKELA. | |
Retrocopy | IKIVFSS*TVDMQGNGNFTPKGNTV-TECFRGSLQKDFNHLNVELSLLGAGGETLG-DT*WG<NRKELAP |
Parental | VRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIR |
.....SH..N.IKGVTLGFRY.MRSVYAHF..N.V.QEN....EI.NFL.EKY.R | |
Retrocopy | IGMTYSHIHNRIKGVTLGFRYRMRSVYAHFLSNFVLQENWYFAEIWNFLDEKYPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 197 .34 RPM |
SRP017611_liver | 0 .00 RPM | 143 .12 RPM |
SRP040447_lung | 0 .00 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 206 .16 RPM |