RetrogeneDB ID: | retro_cpor_1483 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_9:46664514..46665091(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000004543 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.2 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KTILSNQTV-DIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWW-GNRKELAT |
KT.LSN.TV..IPENVDIT.KGRTVIVKGPRGTL.RDFNHI.VEL..LGKKKKRLRVDKWW.GNRKELAT | |
Retrocopy | KTTLSN*TV<GIPENVDITQKGRTVIVKGPRGTLPRDFNHIHVELCFLGKKKKRLRVDKWW<GNRKELAT |
Parental | VRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRAVGVACSVSQ |
...IC.HVQ...KGVTLGFRYKM.SV.AHFPIN.VI..NG..V.I.NFLGEKYIR.V.MRA.GVACSVSQ | |
Retrocopy | ICMICGHVQKVSKGVTLGFRYKMKSVCAHFPINIVI*KNGIHVGIQNFLGEKYIRHVCMRA-GVACSVSQ |
Parental | --AQKDELILEGNDIELVSNSVAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQPDE |
..AQK.ELILEGND.ELVS.S.AALI.QATTV.NK.IRKFLDGIYVSEKGTVQ.PDE | |
Retrocopy | VHAQKHELILEGNDTELVSKS-AALILQATTVENKEIRKFLDGIYVSEKGTVQLPDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .17 RPM | 84 .20 RPM |
SRP017611_kidney | 0 .21 RPM | 197 .34 RPM |
SRP017611_liver | 0 .22 RPM | 143 .12 RPM |
SRP040447_lung | 0 .08 RPM | 176 .34 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 206 .16 RPM |