RetrogeneDB ID: | retro_cpor_1202 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_56:8088104..8088697(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ2 | ||
Ensembl ID: | ENSCPOG00000011458 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.9 % |
Parental protein coverage: | 55.9 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | VFLGGQLTLALCVLLCLNYYSIALGAASLVL-VITYPLMKRVTYWPQLALGLTFNW-GALLGWSAVRGSC |
VFL.GQLT..L.V.LCLNY..IALGAA.L.L..ITYP..KR.TYWPQLALGL.F.W...LL...A...S. | |
Retrocopy | VFLRGQLTYTLDVFLCLNYCRIALGAALLLL<LITYPPVKRITYWPQLALGLIFSW>STLLDCLAIKHSY |
Parental | DLSVCLPLYFAGVM-WTLVYDTIYAHQDKRDDALIGLRSTALLFREDTKYW-LGGFSVAMLGALSLVGAS |
.LS.CL.L.F.G.M...L....IY.HQ.KRDD.LI.L.S.AL.F.E.T..W.L.GF..AM..AL..VG.S | |
Retrocopy | YLSMCLSLCFSGAM<EALISVIIYSHQAKRDDFLINLKSMALEFTENT*RW>LSGFCMAMQAALNQVGIS |
Parental | CAQTPPYYAALLAVAAHLAHQIRTLDIHSPADCWDKF-SSNRTVGIILFLGIILGNLWKEKTDK |
C.Q..PY..A.....AH.AHQI.TLDIH....CW......N.T..I.L...IIL.NL.KEK.D. | |
Retrocopy | CVQIFPYCTAFI-FGAHVAHQIHTLDIHNLGECWVTY<PPN*TIRITLLFRIILKNLQKEKIDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .23 RPM |
SRP017611_kidney | 0 .00 RPM | 29 .84 RPM |
SRP017611_liver | 0 .00 RPM | 10 .01 RPM |
SRP040447_lung | 0 .00 RPM | 16 .32 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 16 .53 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005006 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005744 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011458 | 1 retrocopy |
retro_cpor_1202 ,
|
Equus caballus | ENSECAG00000012542 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015267 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029319 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013801 | 30 retrocopies |
retro_tsyr_1015, retro_tsyr_1155, retro_tsyr_1173, retro_tsyr_1180, retro_tsyr_1207, retro_tsyr_1235, retro_tsyr_1327, retro_tsyr_1335, retro_tsyr_1385, retro_tsyr_1451, retro_tsyr_1491, retro_tsyr_1646, retro_tsyr_1709, retro_tsyr_1742, retro_tsyr_2015, retro_tsyr_2062, retro_tsyr_2087, retro_tsyr_2136, retro_tsyr_2146, retro_tsyr_466, retro_tsyr_513, retro_tsyr_533, retro_tsyr_54, retro_tsyr_548, retro_tsyr_607, retro_tsyr_619, retro_tsyr_654, retro_tsyr_776, retro_tsyr_839, retro_tsyr_995,
|
Tursiops truncatus | ENSTTRG00000005647 | 1 retrocopy |