RetrogeneDB ID: | retro_tsyr_995 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_26860:7080..7868(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ2 | ||
Ensembl ID: | ENSTSYG00000013801 | ||
Aliases: | None | ||
Description: | coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:HGNC Symbol;Acc:25223] |
Percent Identity: | 64.94 % |
Parental protein coverage: | 73. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | TWNTDLAAEQLCFPDSCRLSLVGTGAVLMRA-TGCTFNDLRDRDYDERVTRTANRPIAAGDISTLQSFVF |
TW.T.LA.E...F.D.C.LSL.GT.A.LMRA..GCT.ND.RDRDY..........P..AGDIST..SF.F | |
Retrocopy | TWSTGLAVEPG*FTDWCMLSLFGTTAILMRA<AGCTSNDTRDRDYEKELKKSKS-PKSAGDISTPPSFAF |
Parental | LGG-QLTLALGVLLCLNYYSITLGAASLLLVVTYPLMKRITYWPQLVLGLTFNWGALLGWSAVKGSCEPS |
LGG..LTLA.G.....N.....LGAASLLLVVTY..MKR.T..PQLVLG.TF.WGALLGWSA.KGSCEPS | |
Retrocopy | LGG<KLTLAQG--VHPNCSILVLGAASLLLVVTYAKMKRRT*CPQLVLGSTFKWGALLGWSALKGSCEPS |
Parental | ICLPLY-FSGVMWTLIYDTIYAHQDKRDDALIGLKSTALRFGEDTKLWLRGFGLAML-GALGMVGVNSSQ |
.CLP.Y.FSGVMWTLIYDT.YA....RD.ALIGLKS..L.F.ED.KL.L.GF..AML.GALGMVG.NS.Q | |
Retrocopy | VCLPVY<FSGVMWTLIYDTVYALPHERDKALIGLKSIVLLFREDIKLGLGGFDPAML<GALGMVGANSGQ |
Parental | TIPYYVALVVVGAHLAHQIYTLDIHRPEDCWDKFAS-NTIGL-RFLGIVFGNFWKEKKTEK |
T.PYYVA.V.VG.HL.HQI.TLDIHRPEDC.....S..T.GL..F.GIV.GN.WKEKK... | |
Retrocopy | TLPYYVAMVAVGTHLTHQIDTLDIHRPEDCKG*IISCQTLGLIVFWGIVLGNMWKEKKRKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005006 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005744 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011458 | 1 retrocopy | |
Equus caballus | ENSECAG00000012542 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015267 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029319 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013801 | 30 retrocopies |
retro_tsyr_1015, retro_tsyr_1155, retro_tsyr_1173, retro_tsyr_1180, retro_tsyr_1207, retro_tsyr_1235, retro_tsyr_1327, retro_tsyr_1335, retro_tsyr_1385, retro_tsyr_1451, retro_tsyr_1491, retro_tsyr_1646, retro_tsyr_1709, retro_tsyr_1742, retro_tsyr_2015, retro_tsyr_2062, retro_tsyr_2087, retro_tsyr_2136, retro_tsyr_2146, retro_tsyr_466, retro_tsyr_513, retro_tsyr_533, retro_tsyr_54, retro_tsyr_548, retro_tsyr_607, retro_tsyr_619, retro_tsyr_654, retro_tsyr_776, retro_tsyr_839, retro_tsyr_995 ,
|
Tursiops truncatus | ENSTTRG00000005647 | 1 retrocopy |