RetrogeneDB ID:

retro_tsyr_1491

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_462046:578..1178(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:COQ2
Ensembl ID:ENSTSYG00000013801
Aliases:None
Description:coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:HGNC Symbol;Acc:25223]


Retrocopy-Parental alignment summary:






>retro_tsyr_1491
GCCGCTGGAGACAGGTCAACTCTTTTGTCCTTTGCTTTTCTCGGAAGAAGTTGACCTTGGCGCAGGATGTTCATCTGTGT
CCGAACTGCTCCATTCTAGTTCTGGTGGCAGCATCCTTACTACTTGTCGTCACCTACTCACAAATTAAAAGAAGGACATA
GTGGCCTCAATGAGTCCTGGGGTTGATGTTTAACTGGGGGCGTTACTTGGCTGGTCTGCCCTCAAGTTTTCCTGTGAGCC
ATCTGACTCCTGCCTCTTTATTTTCTGGAGTCACATAGACACCATTTTATGACACTGTGTATGCCCATCAGGACAAAACA
GACGACACTGTGATTGGCCTAAAATCCACAGCGCTGCAATTCAGCGAGGGCACTAAGCTCTGGCTCGGTGGTTTTGGTGC
AGTGATGCTGGGGGCACTGGGCCTGGTGGGCATGAACAGTGGCCAGACCCTCCCCTATTATGCCAAGGGTCACTGTGGGC
ACCCACCTGGCTCACCACATTAACACTCTGGTCATCCACAGACCTGAGGATTGTTGGGATTAATTTGCCTCCAGTCAAAC
TCTAGGACTAATAGTTCTTTTCGGGATTGTCCATGGGAAT

ORF - retro_tsyr_1491 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.6 %
Parental protein coverage: 55.1 %
Number of stop codons detected: 4
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalAAGDISTLQSFVFLGG-QLTLALGVLLCLNYYSITLGAASLLLVVTYPLMKRITYWPQLVLGLTFNWG-A
AAGD.STL.SF.FLG...LTLA..V.LC.N.....L.AASLLLVVTY...KR.T.WPQ.VLGL.FNWG.A
RetrocopyAAGDRSTLLSFAFLGR<KLTLAQDVHLCPNCSILVLVAASLLLVVTYSQIKRRT*WPQ*VLGLMFNWG<A
ParentalLLGWSAVKGSCEPSIC-LPLYF-SGVMWTLIYDTIYAHQDKRDDALIGLKSTALRFGEDTKLWLRGFGLA
LLGWSA.K.SCEPS...LPLYF.SGV..T..YDT.YAHQDK.DD..IGLKSTAL.F.E.TKLWL.GFG..
RetrocopyLLGWSALKFSCEPSDS<LPLYF<SGVT*TPFYDTVYAHQDKTDDTVIGLKSTALQFSEGTKLWLGGFGAV
ParentalMLGALGMVGVNSSQTIPYYVAL-VVVGAHLAHQIYTLDIHRPEDCWDKFASN-TIGLRFL-GIVFGN
MLGALG.VG.NS.QT.P.Y.A..V.VG.HLAH.I.TL.IHRPEDCWD.FAS..T.GL..L.GIV.GN
RetrocopyMLGALGLVGMNSGQTLP-YYAK>VTVGTHLAHHINTLVIHRPEDCWD*FASSQTLGLIVLFGIVHGN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1491 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 37 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000050061 retrocopy
Bos taurus ENSBTAG000000057441 retrocopy
Cavia porcellus ENSCPOG000000114581 retrocopy
Equus caballus ENSECAG000000125421 retrocopy
Myotis lucifugus ENSMLUG000000152671 retrocopy
Mus musculus ENSMUSG000000293191 retrocopy
Tarsius syrichta ENSTSYG00000013801 30 retrocopies
Tursiops truncatus ENSTTRG000000056471 retrocopy



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