RetrogeneDB ID: | retro_tsyr_619 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_151772:1061..1808(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COQ2 | ||
Ensembl ID: | ENSTSYG00000013801 | ||
Aliases: | None | ||
Description: | coenzyme Q2 4-hydroxybenzoate polyprenyltransferase [Source:HGNC Symbol;Acc:25223] |
Percent Identity: | 62.55 % |
Parental protein coverage: | 69.15 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 6 |
Parental | LAAEQLCFPDSCRLSLVGT-GAVLMRAT-GCT-FNDLRDRDYDERVTRTANRPIAAGDISTLQSFVFLGG |
LA.E...FPD.C.LSL.G..GA.LMRA..GC..FND..DR......TRTANR..AAGDISTL.S..F.G. | |
Retrocopy | LASEPG*FPDWCTLSLFGM<GAILMRAE<GCA<FNDMWDRHCG*KITRTANRQRAAGDISTL-SPLFSGR |
Parental | QLTLALGVLLCLNYYSITLGAASLLLVVTYPLMKRITYWPQLVLGLTFNWGALLGWSAVKGSCEPSICLP |
..TLA.GVLLCLN..S..LGAASLLLV.TY..MKR.TYWPQ.VLGL.F.WG..LGWSA.KGS.EPS.CLP | |
Retrocopy | KPTLAQGVLLCLNCSSLVLGAASLLLVATYSRMKR-TYWPQ*VLGLSFKWGTSLGWSALKGSSEPSVCLP |
Parental | LYF-SGVMWTLIYDTIYAHQDKRDDALIGL-KSTALRFGEDTKLWLRGFGLAML-GALGMVGVNSSQTIP |
LYF.SGV.WTLI..TIY..Q..RD..LI.L..STAL.FGEDT.L.L.GF...ML.GAL..VGVNS..T.P | |
Retrocopy | LYF<SGVVWTLIFETIYVLQHERDYVLINL<DSTALQFGEDTRLRLGGFRPVML<GALALVGVNSG*TAP |
Parental | YYVALVVVGAHLAHQIYTLDIHRPEDCWDKFASNTIG--LRFLGIVFGN |
...A.V.VG.HLAHQI..LDIHRP.DC.D.F.S........F.GI..GN | |
Retrocopy | FNAAMVAVGTHLAHQIDILDIHRPDDC*D*FISSQTPELIVFWGIALGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005006 | 1 retrocopy | |
Bos taurus | ENSBTAG00000005744 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011458 | 1 retrocopy | |
Equus caballus | ENSECAG00000012542 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015267 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029319 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000013801 | 30 retrocopies |
retro_tsyr_1015, retro_tsyr_1155, retro_tsyr_1173, retro_tsyr_1180, retro_tsyr_1207, retro_tsyr_1235, retro_tsyr_1327, retro_tsyr_1335, retro_tsyr_1385, retro_tsyr_1451, retro_tsyr_1491, retro_tsyr_1646, retro_tsyr_1709, retro_tsyr_1742, retro_tsyr_2015, retro_tsyr_2062, retro_tsyr_2087, retro_tsyr_2136, retro_tsyr_2146, retro_tsyr_466, retro_tsyr_513, retro_tsyr_533, retro_tsyr_54, retro_tsyr_548, retro_tsyr_607, retro_tsyr_619 , retro_tsyr_654, retro_tsyr_776, retro_tsyr_839, retro_tsyr_995,
|
Tursiops truncatus | ENSTTRG00000005647 | 1 retrocopy |