RetrogeneDB ID: | retro_cpor_1324 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_7:50451156..50452069(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PABPC3 | ||
Ensembl ID: | ENSCPOG00000012917 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.23 % |
Parental protein coverage: | 54.9 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 6 |
Parental | ERALDTMNF-DVIKGKPVRIMWSQRDPSLRKSGVGNI-FIKNLDKSIDNKALYDTFSAFGNIL-SCKVVC |
ER.LDT..F.DVIKGK.....WS....SL...G.G....I.NL..SIDNKALYDTF.AF.NIL.SCKV.. | |
Retrocopy | ERTLDTTGFFDVIKGKSSCAKWSL---SLCQNGAGHK>LIRNLGRSIDNKALYDTFPAFVNIL<SCKV-- |
Parental | DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK-EFTNVYIKNFGED |
.ENG.K.YGFV.F.TQEAAER..E..N....ND.KVFV..FKS.K..EAE.GAR.K.E..N.YIKNFGED | |
Retrocopy | -ENGPKSYGFVRFQTQEAAERMTEN-NKCF*NDHKVFVEQFKSHKQ-EAECGARIK<ELNNIYIKNFGED |
Parental | MDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQ--IYVGRAQK- |
.DDE...DLFGK.GPAL.VK..T.ESGKSK.FG..SFERHED.QKAVDE.NGK.L.GK......G..QK. | |
Retrocopy | RDDEHINDLFGKSGPALGVKRTTRESGKSKEFGLGSFERHEDIQKAVDEINGKGLSGKTNLCCLGSDQK< |
Parental | KVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS-PFGTITSAKVMMEGGRSKGFGF |
KVERQTELK.KFEQMK.DRIT.YQGV.L..KN...GI.DE.L.KEF......ITS.K...EG..S.GFGF | |
Retrocopy | KVERQTELKCKFEQMK*DRITGYQGVDL*LKNGSGGI-DECLQKEFA>DHQQITSRKAVTEGDCSGGFGF |
Parental | VCFSSPEEATKAVTEMNGRIVAT-KPLYVALAQRKEERQAHLT |
VCFSSP.EA.K.VTEMN.RI.AT.KPL............AHLT | |
Retrocopy | VCFSSPVEAIKVVTEMNSRIGAT<KPL---V*HKERQTLAHLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 138 .61 RPM |
SRP017611_kidney | 1 .15 RPM | 281 .61 RPM |
SRP017611_liver | 0 .04 RPM | 180 .38 RPM |
SRP040447_lung | 0 .00 RPM | 660 .94 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 97 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000348 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008178 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015833 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000002044 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009552 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012917 | 1 retrocopy |
retro_cpor_1324 ,
|
Dasypus novemcinctus | ENSDNOG00000008718 | 2 retrocopies | |
Felis catus | ENSFCAG00000001874 | 1 retrocopy | |
Homo sapiens | ENSG00000070756 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006785 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012245 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017786 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000006222 | 4 retrocopies | |
Mus musculus | ENSMUSG00000022283 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004354 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000018790 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000008639 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011267 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004229 | 2 retrocopies |