Parental gene:

ENSOCUG00000004354

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:3:116334585..116347549(-)


>ENSOCUG00000004354
ATGAACCCCAGCGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTGCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGTTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTGATCAAGGGAAAG
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCCCTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATTTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCTTGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACATTTTGAGACGCAGGAGGCTGCTGAAAGAGCTATTGAAAAAATGAATGGG
ATGCTTCTAAATGATCGCAAAGTGTTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCAGAGCTCGGAGCTAGGGC
AAAAGAGTTCACCAATGTTTACATCAAGAATTTTGGGGAAGACATGGATGACGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGACCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAGAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAATGGAAAGGAGCTCAATGGAAAACAAATTTACGTTGGTCGAGCTCA
GAAAAAAGTGGAACGCCAGACGGAACTTAAGCGCAAATTTGAGCAGATGAAGCAAGATAGGATCACCAGATACCAGGGTG
TTAACCTTTATGTGAAAAATCTGGACGATGGTATTGATGATGAGCGGCTCCGAAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCTAAGGTTATGATGGAGGGTGGTCGAAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACCAAGCCCTTGTATGTAGCTTTAGCTCAGCGCAAGGAGGAGC
GCCAGGCTCACCTCACTAACCAGTACATGCAGAGAATGGCGAGTGTGCGAGCTGTGCCCAACCCCGTGATCAACCCTTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTCAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCCGCTCCTAGACCACCATTTAGCACTATGAGACCAGCTTCTTCACAGGTTCCACGGGTCATGTCCACACAG
CGTGTTGCTAACACATCGACACAGACAATGGGCCCACGTCCTGCAGCTGCTGCTGCTGCAGCCACTCCTGCTGTGCGCAC
GGTTCCACAGTACAAGTACGCTGCAGGCGTTCGCAATCCTCAGCAGCATCTAAATGCACAGCCGCAGGTGACCATGCAGC
AGCCTGCTGTTCATGTACAAGGTCAGGAGCCTTTGACTGCTTCCATGTTGGCATCTGCCCCCCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATCGATAATTCAGAACTTCTTCATATGCTTGAGTCTCCAGAGTCTCTCCGTTCTAAAGTGGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTGAACAGTGCCACCGGCGTTCCCGCTGTTTAG

Library Parental gene expression (RPM)
SRP017611_brain 75 .17 RPM
SRP017611_kidney 215 .69 RPM
SRP017611_liver 144 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 ortholog_one2one 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 ortholog_one2one 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000015833 possible_ortholog 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG00000012917 ortholog_one2one 1 retrogene
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG00000008718 ortholog_one2one 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000001874 ortholog_one2one 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000070756 possible_ortholog 1 retrogene
retro_hsap_88,
Gorilla gorilla ENSGGOG00000006785 ortholog_one2one 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 ortholog_one2one 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000017786 possible_ortholog 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_many2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 possible_ortholog 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Nomascus leucogenys ENSNLEG00000003142 possible_ortholog 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000000562 within_species_paralog 2 retrogenes
retro_ocun_153, retro_ocun_792,
Pongo abelii ENSPPYG00000018790 possible_ortholog 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Pteropus vampyrus ENSPVAG00000016640 possible_ortholog 2 retrogenes
retro_pvam_10, retro_pvam_855,
Rattus norvegicus ENSRNOG00000008639 possible_ortholog 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_many2many 1 retrogene
retro_shar_24,
Sus scrofa ENSSSCG00000006063 possible_ortholog 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Ictidomys tridecemlineatus ENSSTOG00000016395 possible_ortholog 2 retrogenes
retro_itri_139, retro_itri_48,
Tarsius syrichta ENSTSYG00000004229 ortholog_one2one 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,
Tursiops truncatus ENSTTRG00000004689 possible_ortholog 2 retrogenes
retro_ttru_1050, retro_ttru_1812,
Vicugna pacos ENSVPAG00000003865 possible_ortholog 4 retrogenes
retro_vpac_14, retro_vpac_384, retro_vpac_620, retro_vpac_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_13 99.84 100.00
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Download FASTA sequences of all ENSOCUG00000004354 retrocopies