Parental gene:

PABPC1, ENSG00000070756

Aliases:PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1
Description:poly(A) binding protein, cytoplasmic 1 [Source:HGNC Symbol;Acc:8554]
Organism:Human (Homo sapiens)
Coordinates:8:101698043..101735037(-)


>ENSG00000070756
ATGAACCCCAGTGCCCCCAGCTACCCCATGGCCTCGCTCTACGTGGGGGACCTCCACCCCGACGTGACCGAGGCGATGCT
CTACGAGAAGTTCAGCCCGGCCGGGCCCATCCTCTCCATCCGGGTCTGCAGGGACATGATCACCCGCCGCTCCTTGGGCT
ACGCGTATGTGAACTTCCAGCAGCCGGCGGACGCGGAGCGTGCTTTGGACACCATGAATTTTGATGTTATAAAGGGCAAG
CCAGTACGCATCATGTGGTCTCAGCGTGATCCATCACTTCGCAAAAGTGGAGTAGGCAACATATTCATTAAAAATCTGGA
CAAATCCATTGATAATAAAGCACTGTATGATACATTTTCTGCTTTTGGTAACATCCTTTCATGTAAGGTGGTTTGTGATG
AAAATGGTTCCAAGGGCTATGGATTTGTACACTTTGAGACGCAGGAAGCAGCTGAAAGAGCTATTGAAAAAATGAATGGA
ATGCTCCTAAATGATCGCAAAGTATTTGTTGGACGATTTAAGTCTCGTAAAGAACGAGAAGCTGAACTTGGAGCTAGGGC
AAAAGAATTCACCAATGTTTACATCAAGAATTTTGGAGAAGACATGGATGATGAGCGCCTTAAGGATCTCTTTGGCAAGT
TTGGGCCTGCCTTAAGTGTGAAAGTAATGACTGATGAAAGTGGAAAATCCAAAGGATTTGGATTTGTAAGCTTTGAAAGG
CATGAAGATGCACAGAAAGCTGTGGATGAGATGAACGGAAAGGAGCTCAATGGAAAACAAATTTATGTTGGTCGAGCTCA
GAAAAAGGTGGAACGGCAGACGGAACTTAAGCGCAAATTTGAACAGATGAAACAAGATAGGATCACCAGATACCAGGGTG
TTAATCTTTATGTGAAAAATCTTGATGATGGTATTGATGATGAACGTCTCCGGAAAGAGTTTTCTCCATTTGGTACAATC
ACTAGTGCAAAGGTTATGATGGAGGGTGGTCGCAGCAAAGGGTTTGGTTTTGTATGTTTCTCCTCCCCAGAAGAAGCCAC
TAAAGCAGTTACAGAAATGAACGGTAGAATTGTGGCCACAAAGCCATTGTATGTAGCTTTAGCTCAGCGCAAAGAAGAGC
GCCAGGCTCACCTCACTAACCAGTATATGCAGAGAATGGCAAGTGTACGAGCTGTTCCCAACCCTGTAATCAACCCCTAC
CAGCCAGCACCTCCTTCAGGTTACTTCATGGCAGCTATCCCACAGACTCAGAACCGTGCTGCATACTATCCTCCTAGCCA
AATTGCTCAACTAAGACCAAGTCCTCGCTGGACTGCTCAGGGTGCCAGACCTCATCCATTCCAAAATATGCCCGGTGCTA
TCCGCCCAGCTGCTCCTAGACCACCATTTAGTACTATGAGACCAGCTTCTTCACAGGTTCCACGAGTCATGTCAACACAG
CGTGTTGCTAACACATCAACACAGACAATGGGTCCACGTCCTGCAGCTGCAGCCGCTGCAGCTACTCCTGCTGTCCGCAC
CGTTCCACAGTATAAATATGCTGCAGGAGTTCGCAATCCTCAGCAACATCTTAATGCACAGCCACAAGTTACAATGCAAC
AGCCTGCTGTTCATGTACAAGGTCAGGAACCTTTGACTGCTTCCATGTTGGCATCTGCCCCTCCTCAAGAGCAAAAGCAA
ATGTTGGGTGAACGGCTGTTTCCTCTTATTCAAGCCATGCACCCTACTCTTGCTGGTAAAATCACTGGCATGTTGTTGGA
GATTGATAATTCAGAACTTCTTCATATGCTCGAGTCTCCAGAGTCACTCCGTTCTAAGGTTGATGAAGCTGTAGCTGTAC
TACAAGCCCACCAAGCTAAAGAGGCTGCCCAGAAAGCAGTTAACAGTGCCACCGGTGTTCCAACTGTTTAA

Library Parental gene expression (RPM)
bodymap2_adipose 940 .21 RPM
bodymap2_adrenal 728 .94 RPM
bodymap2_brain 156 .20 RPM
bodymap2_breast 539 .93 RPM
bodymap2_colon 1100 .11 RPM
bodymap2_heart 176 .04 RPM
bodymap2_kidney 326 .71 RPM
bodymap2_liver 235 .61 RPM
bodymap2_lung 1010 .44 RPM
bodymap2_lymph_node 968 .43 RPM
bodymap2_ovary 996 .65 RPM
bodymap2_prostate 1375 .63 RPM
bodymap2_skeletal_muscle 202 .12 RPM
bodymap2_testis 1177 .43 RPM
bodymap2_thyroid 400 .84 RPM
bodymap2_white_blood_cells 2554 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000000348 possible_ortholog 1 retrogene
retro_amel_1650,
Choloepus hoffmanni ENSCHOG00000008178 possible_ortholog 1 retrogene
retro_chof_2531,
Callithrix jacchus ENSCJAG00000015833 possible_ortholog 5 retrogenes
retro_cjac_1586, retro_cjac_2571, retro_cjac_3218, retro_cjac_4039, retro_cjac_41,
Cavia porcellus ENSCPOG00000012917 possible_ortholog 1 retrogene
retro_cpor_1324,
Dasypus novemcinctus ENSDNOG00000008718 possible_ortholog 2 retrogenes
retro_dnov_1530, retro_dnov_2259,
Felis catus ENSFCAG00000001874 possible_ortholog 1 retrogene
retro_fcat_1927,
Homo sapiens ENSG00000076067 other_paralog 1 retrogene
retro_hsap_1143,
Homo sapiens ENSG00000090621 within_species_paralog 2 retrogenes
retro_hsap_109, retro_hsap_74,
Homo sapiens ENSG00000153250 other_paralog 1 retrogene
retro_hsap_1131,
Gorilla gorilla ENSGGOG00000006785 possible_ortholog 1 retrogene
retro_ggor_1986,
Myotis lucifugus ENSMLUG00000012245 possible_ortholog 1 retrogene
retro_mluc_579,
Macaca mulatta ENSMMUG00000017786 possible_ortholog 2 retrogenes
retro_mmul_1462, retro_mmul_895,
Monodelphis domestica ENSMODG00000006222 ortholog_many2many 4 retrogenes
retro_mdom_123, retro_mdom_1867, retro_mdom_216, retro_mdom_43,
Mus musculus ENSMUSG00000022283 possible_ortholog 2 retrogenes
retro_mmus_102, retro_mmus_2164,
Nomascus leucogenys ENSNLEG00000003142 possible_ortholog 3 retrogenes
retro_nleu_221, retro_nleu_2412, retro_nleu_611,
Oryctolagus cuniculus ENSOCUG00000004354 possible_ortholog 1 retrogene
retro_ocun_13,
Pongo abelii ENSPPYG00000018790 ortholog_one2one 3 retrogenes
retro_pabe_2373, retro_pabe_68, retro_pabe_854,
Pteropus vampyrus ENSPVAG00000016640 possible_ortholog 2 retrogenes
retro_pvam_10, retro_pvam_855,
Rattus norvegicus ENSRNOG00000008639 possible_ortholog 3 retrogenes
retro_rnor_1228, retro_rnor_2321, retro_rnor_265,
Sarcophilus harrisii ENSSHAG00000011267 ortholog_many2many 1 retrogene
retro_shar_24,
Sus scrofa ENSSSCG00000006063 possible_ortholog 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Ictidomys tridecemlineatus ENSSTOG00000016395 ortholog_one2many 2 retrogenes
retro_itri_139, retro_itri_48,
Tarsius syrichta ENSTSYG00000004229 possible_ortholog 2 retrogenes
retro_tsyr_1743, retro_tsyr_273,
Tursiops truncatus ENSTTRG00000004689 possible_ortholog 2 retrogenes
retro_ttru_1050, retro_ttru_1812,
Vicugna pacos ENSVPAG00000003865 possible_ortholog 4 retrogenes
retro_vpac_14, retro_vpac_384, retro_vpac_620, retro_vpac_649,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_88 93.40 61.95
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSG00000070756 retrocopies