RetrogeneDB ID: | retro_cpor_1396 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:26762569..26763095(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ESD | ||
Ensembl ID: | ENSCPOG00000011089 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.27 % |
Parental protein coverage: | 62.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MALKQISSNKCF-GGLQKVFEHESVELKCKMKFAVYLPPKAETGKCPALYWLSGLTCTEQNFITKSGYHQ |
MALKQIS.N.CF.GG..K.F...S..LKCKMKF..Y..PKAET.KCPALY.LSGLTCTE.NF..KSGYHQ | |
Retrocopy | MALKQISRNECF>GGCRK-FSNVSM*LKCKMKFTDYISPKAETTKCPALY*LSGLTCTE*NFV*KSGYHQ |
Parental | AASEHGLVVIAPDTSPRECNIKGEDDHWDFGTGAGFYVNATEEPWKTNYRMYAYVTEELPQLINANFPVD |
AASEHG.VVI.PD.SP..C.IKGED..WDFGTGAGFYVNATEEP.KTNYR.....TEELPQLI.ANFPV. | |
Retrocopy | AASEHGFVVITPDASPHGCHIKGEDIIWDFGTGAGFYVNATEEPQKTNYRVCSCITEELPQLICANFPVN |
Parental | PQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPLC |
PQRMSI.GH.M.GHGALICALKNPGK.KSVSAF.P.C | |
Retrocopy | PQRMSILGHFMEGHGALICALKNPGKHKSVSAFTPIC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .84 RPM |
SRP017611_kidney | 0 .00 RPM | 100 .81 RPM |
SRP017611_liver | 0 .00 RPM | 132 .54 RPM |
SRP040447_lung | 0 .00 RPM | 51 .45 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 42 .48 RPM |