RetrogeneDB ID: | retro_mmus_1166 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:7241429..7242287(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000094242 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Esd | ||
Ensembl ID: | ENSMUSG00000021996 | ||
Aliases: | Esd, Es-10, Es10, FGH, sid478 | ||
Description: | esterase D/formylglutathione hydrolase [Source:MGI Symbol;Acc:MGI:95421] |
Percent Identity: | 95.1 % |
Parental protein coverage: | 96.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PRRRMALKQISSNRCFGGLQKVFEHSSVELKCKMRFAVYLPPQAESGKCPALYWLSGLTCTEQNFISKSG |
PRRRMALKQISSNRCFGGLQKVF.HSSVELKCKM.FAVYLPPQAESGKCPALYWLSGLTCTEQN.ISKSG | |
Retrocopy | PRRRMALKQISSNRCFGGLQKVFKHSSVELKCKMKFAVYLPPQAESGKCPALYWLSGLTCTEQNYISKSG |
Parental | YQQAASEHGLVVIAPDTSPRGCNIKGEDDSWDFGTGAGFYVNATEDPWKANYRMYSYVTEELPQLINANF |
YQQAASE.GLVVIAPDTSPRGCNIKGEDDSWDFG.GAGFYVNATEDPWKANYRM.SYVTEELPQLINANF | |
Retrocopy | YQQAASEPGLVVIAPDTSPRGCNIKGEDDSWDFGIGAGFYVNATEDPWKANYRMCSYVTEELPQLINANF |
Parental | PVDPQRMSIFGHSMGGHGALICALKNPGKYRSVSAFAPICNPVLCSWGKKAFSGYLGPDESKWKAYDATC |
PVDPQRMSIFGHSMGGHGALICALKNPGKYRSVSAFAPICNPVLC.WGKK.F.GYLGPDESKWKAYDATC | |
Retrocopy | PVDPQRMSIFGHSMGGHGALICALKNPGKYRSVSAFAPICNPVLCPWGKKTFRGYLGPDESKWKAYDATC |
Parental | LVKAYSGSQIDILIDQGKDDEFLSNGQLLPDNFIAACTEKKIPVVFRLQEGYDHSYYFIATFIADHIRHH |
L.K.YSGSQIDILIDQGKDD..LSNGQLLPDNFIAACTEKKIPVVFRLQEGYDHSY.FIATFIADHIRHH | |
Retrocopy | LMKSYSGSQIDILIDQGKDDKILSNGQLLPDNFIAACTEKKIPVVFRLQEGYDHSYCFIATFIADHIRHH |
Parental | AKYLNA |
AKYLNA | |
Retrocopy | AKYLNA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 34 .41 RPM |
SRP007412_cerebellum | 0 .00 RPM | 20 .84 RPM |
SRP007412_heart | 0 .00 RPM | 37 .70 RPM |
SRP007412_kidney | 0 .02 RPM | 126 .60 RPM |
SRP007412_liver | 0 .00 RPM | 101 .26 RPM |
SRP007412_testis | 0 .00 RPM | 3 .70 RPM |