RetrogeneDB ID:

retro_fcat_1641

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:D4:73229959..73230393(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ESD
Ensembl ID:ENSFCAG00000026826
Aliases:None
Description:esterase D [Source:HGNC Symbol;Acc:3465]


Retrocopy-Parental alignment summary:






>retro_fcat_1641
TTACTACCAAAGGCAGAAACTGGAAAATCCTCTGCACTGAGTTGGCTGTCTGGTTTAACTTGCACAGAACAAAATTTTGT
ATCAAAGTCTGGTTCTCATCAAGCTGCCTCAGAACATGGCCTTGTCATTGCTCCAGATACCAGCCCTCGTGTCTGTAATT
TTAAAGGAGAAGGCTAGAGCTGGAACTTTGGCAACGGCGCTGGGTTTTATGTGGATGCTATTGAAGATCCTTGGAAAATT
ACCTATAGAATGTATTCTTAGGTAACTGAGGAGCTACCCAACTCATAAATGCCCATATTCCAGTGGACCCACAAAGGATG
TCAATTTCTGGCCACTCTGTGGGAGCACATGAATCTCTTATCTGTACTTTGAAGAATCCTGGAAAGTACAAATCTGTGTC
AGCATTTGCTCCAATTTGCAACCCAGTGCTCTGT

ORF - retro_fcat_1641 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.08 %
Parental protein coverage: 51.58 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalLPPKAETGKCPALYWLSGLTCTEQNFISKSGYHQAASEHGLVVIAPDTSPRGCNIKGEDESWDFGTGAGF
L.PKAETGK..AL.WLSGLTCTEQNF.SKSG.HQAASEHGL.VIAPDTSPR.CN.KGE..SW.FG.GAGF
RetrocopyLLPKAETGKSSALSWLSGLTCTEQNFVSKSGSHQAASEHGL-VIAPDTSPRVCNFKGEG*SWNFGNGAGF
ParentalYVDATEDPWKTNYRMYSYVTEELP-KLINANFPVDPQRMSIFGHSMGGHGALICALKNPGKYKKSVSAFA
YVDA.EDPWK..YRMYS.VTEELP..LINA..PVDPQRMSI.GHS.G.H..LIC.LKNPGKY.KSVSAFA
RetrocopyYVDAIEDPWKITYRMYS*VTEELP<QLINAHIPVDPQRMSISGHSVGAHESLICTLKNPGKY-KSVSAFA
ParentalPICNPVLC
PICNPVLC
RetrocopyPICNPVLC

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .11 RPM 61 .40 RPM
SRP017611_kidney 0 .10 RPM 169 .63 RPM
SRP017611_liver 0 .30 RPM 77 .33 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1641 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1641 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 22 parental genes, and 52 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000133772 retrocopies
Bos taurus ENSBTAG000000034151 retrocopy
Canis familiaris ENSCAFG000000044732 retrocopies
Callithrix jacchus ENSCJAG000000093802 retrocopies
Cavia porcellus ENSCPOG000000110893 retrocopies
Dasypus novemcinctus ENSDNOG000000175532 retrocopies
Equus caballus ENSECAG000000243501 retrocopy
Felis catus ENSFCAG00000026826 2 retrocopies
retro_fcat_1641 , retro_fcat_812,
Loxodonta africana ENSLAFG000000069011 retrocopy
Macaca mulatta ENSMMUG000000042091 retrocopy
Monodelphis domestica ENSMODG000000112902 retrocopies
Mustela putorius furoENSMPUG000000014942 retrocopies
Mus musculus ENSMUSG000000219969 retrocopies
Oryctolagus cuniculus ENSOCUG000000099681 retrocopy
Otolemur garnettii ENSOGAG000000100481 retrocopy
Ochotona princeps ENSOPRG000000114612 retrocopies
Procavia capensis ENSPCAG000000044021 retrocopy
Pteropus vampyrus ENSPVAG000000099103 retrocopies
Rattus norvegicus ENSRNOG000000095122 retrocopies
Sarcophilus harrisii ENSSHAG000000095813 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000028542 retrocopies
Tupaia belangeri ENSTBEG000000051207 retrocopies



Copyright © RetrogeneDB 2014-2017