RetrogeneDB ID: | retro_cpor_1409 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:52866214..52867053(+) | ||
Located in intron of: | ENSCPOG00000004751 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MORF4L1 | ||
Ensembl ID: | ENSCPOG00000003778 | ||
Aliases: | None | ||
Description: | mortality factor 4 like 1 [Source:HGNC Symbol;Acc:16989] |
Percent Identity: | 94.31 % |
Parental protein coverage: | 77.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VHHPLLTSSWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTAGLQQKNVDVKTKKN |
.H.......WDEWVPESRVLKYVDTNLQKQRELQKANQEQY.EGKMRGAAPGKKTA.LQQKNVDVKTKKN | |
Retrocopy | IHYSEWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYPEGKMRGAAPGKKTADLQQKNVDVKTKKN |
Parental | KQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFY |
K.KTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNR.EVKVKIPEELKPWLVDDWDLITRQKQLFY | |
Retrocopy | KPKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRIEVKVKIPEELKPWLVDDWDLITRQKQLFY |
Parental | LPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAP |
LPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQL.YKFERPQYAEILADHPDAP | |
Retrocopy | LPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLFYKFERPQYAEILADHPDAP |
Parental | MSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVA-PPEYHRKA |
MSQVYGAPHLLRLFV.IGAM.AYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVA.PPEYHRKA | |
Retrocopy | MSQVYGAPHLLRLFVLIGAM*AYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVA<PPEYHRKA |
Parental | V |
V | |
Retrocopy | V |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 3 .97 RPM | 120 .21 RPM |
SRP017611_kidney | 9 .42 RPM | 217 .33 RPM |
SRP017611_liver | 4 .57 RPM | 104 .03 RPM |
SRP040447_lung | 4 .54 RPM | 197 .23 RPM |
SRP040447_skeletal_muscle | 3 .00 RPM | 132 .71 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010988 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014113 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002214 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000003778 | 3 retrocopies |
retro_cpor_114, retro_cpor_1409 , retro_cpor_915,
|
Equus caballus | ENSECAG00000008091 | 1 retrocopy | |
Felis catus | ENSFCAG00000012197 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009851 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001756 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011517 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015117 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006047 | 4 retrocopies | |
Sorex araneus | ENSSARG00000004519 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018402 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013294 | 3 retrocopies |