RetrogeneDB ID: | retro_ecab_62 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | X:81739381..81740221(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000002732 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MORF4L1 | ||
Ensembl ID: | ENSECAG00000008091 | ||
Aliases: | None | ||
Description: | mortality factor 4 like 1 [Source:HGNC Symbol;Acc:16989] |
Percent Identity: | 79.84 % |
Parental protein coverage: | 77.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETF |
Q....E....G...G..........V..KT.KNKQKTPGNGDGGSTSE.PQPPRKKRAR.DPTVE.EE.F | |
Retrocopy | QQKNLEPALPGRWGGRSAENPPSGSVR-KTRKNKQKTPGNGDGGSTSEAPQPPRKKRARADPTVESEEVF |
Parental | MNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAG |
.NR.EVKVKIPEELKPWLV.DWDL.TRQKQLF.LPAKKNVD.ILE.YA..KKS.GN.DNKEYAVNEVVAG | |
Retrocopy | KNRMEVKVKIPEELKPWLVEDWDLVTRQKQLFQLPAKKNVDAILEEYADCKKSQGNVDNKEYAVNEVVAG |
Parental | IKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNY |
IKEYFNVMLGTQLLYKFERPQYAEIL..HPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLL.Y | |
Retrocopy | IKEYFNVMLGTQLLYKFERPQYAEILLAHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLGY |
Parental | LHDFLKYLAKNSATLFSASDYEVAPPEYHRKAV |
LHDFLKYLAKN.A.LF.ASDY.VA..EYHRKA. | |
Retrocopy | LHDFLKYLAKNAASLFTASDYKVASAEYHRKAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 60 .74 RPM | 173 .78 RPM |
SRP021940_cerebellum | 58 .58 RPM | 191 .16 RPM |
SRP021940_embryo | 121 .16 RPM | 169 .44 RPM |
SRP021940_placental_villous | 113 .06 RPM | 198 .46 RPM |
SRP021940_synovial_membrane | 58 .94 RPM | 114 .42 RPM |
SRP021940_testis | 49 .88 RPM | 529 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Bos taurus | retro_btau_137 |
Sus scrofa | retro_sscr_93 |
Canis familiaris | retro_cfam_20 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000010988 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000014113 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002214 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000003778 | 3 retrocopies | |
Equus caballus | ENSECAG00000008091 | 1 retrocopy |
retro_ecab_62 ,
|
Felis catus | ENSFCAG00000012197 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009851 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001756 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000011517 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015117 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000006047 | 4 retrocopies | |
Sorex araneus | ENSSARG00000004519 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018402 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013294 | 3 retrocopies |