Parental gene:

ENSOCUG00000015117

Aliases:None
Description:None
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018746:368052..392126(-)


>ENSOCUG00000015117
GAGCGAGTATTGTGCTTTCATGGGCCTCTTCTTTATGAAGCAAAGTGTGTAAAGGTTGCTATAAAGGACAAACAAGTGAA
ATATTTTATACATTACAGTGGTTGGAATAAAAAAAGTGCTGGGAGGCCCAGGCGCTCTGAAAAAACTTTGAAGACACATG
AGGATATTGTAGCCCTTTTTCCTGTTCCTGAAGGAGCTCCCTCAGTACACCACCCCCTCCTGACCTCTAGTTGGGATGAA
TGGGTTCCAGAGAGCAGAGTACTCAAATATGTGGACACCAATCTGCAGAAACAGCGAGAACTTCAGAAGGCCAACCAGGA
GCAGTATGCAGAGGGGAAGATGAGAGGGGCTGCTCCAGGAAAGAAGACATCTGGTCTGCAACAGAAAAATGTAGAAGTGA
AAACCAAAAAGAACAAACAGAAAACACCTGGAAATGGAGATGGCGGCAGTACTAGTGAGACCCCTCAGCCTCCTCGGAAG
AAAAGGGCCCGTGTAGATCCTACTGTTGAAAATGAAGAAACATTCATGAACAGAGTGGAAGTTAAAGTAAAGATTCCTGA
AGAGCTCAAACCATGGCTTGTTGATGACTGGGACTTAATTACAAGACAAAAACAGCTGTTTTATCTTCCTGCGAAGAAGA
ATGTGGATTCCATTTTGGAGGATTATGCAAATTACAAGAAATCTCGTGGAAACACAGATAATAAGGAATACGCTGTTAAT
GAAGTTGTGGCAGGGATAAAAGAATACTTCAACGTAATGCTGGGCACTCAGCTGCTCTATAAATTTGAGAGACCACAGTA
CGCTGAAATCCTCGCAGATCATCCTGACGCACCAATGTCCCAGGTGTATGGAGCGCCACATCTACTGCGATTATTTGTGC
GAATTGGAGCGATGTTGGCTTATACACCTCTGGATGAGAAGAGCCTTGCTTTGTTACTGAATTATCTTCATGATTTCCTA
AAGTACCTGGCAAAGAATTCAGCAACTTTGTTTAGCGCCAGTGATTATGAAGTGGCTCCCCCTGAGTACCACCGGAAAGC
TGTG

Library Parental gene expression (RPM)
SRP017611_liver 32 .14 RPM
SRP017611_kidney 81 .69 RPM
SRP017611_brain 123 .62 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012344 possible_ortholog 1 retrogene
retro_amel_124,
Bos taurus ENSBTAG00000010988 possible_ortholog 1 retrogene
retro_btau_137,
Canis familiaris ENSCAFG00000014113 possible_ortholog 1 retrogene
retro_cfam_20,
Callithrix jacchus ENSCJAG00000002214 possible_ortholog 5 retrogenes
retro_cjac_2113, retro_cjac_2280, retro_cjac_2574, retro_cjac_3026, retro_cjac_3179,
Cavia porcellus ENSCPOG00000003778 ortholog_one2one 3 retrogenes
retro_cpor_114, retro_cpor_1409, retro_cpor_915,
Equus caballus ENSECAG00000008091 ortholog_one2one 1 retrogene
retro_ecab_62,
Felis catus ENSFCAG00000012197 ortholog_one2one 1 retrogene
retro_fcat_75,
Homo sapiens ENSG00000185787 possible_ortholog 3 retrogenes
retro_hsap_309, retro_hsap_3125, retro_hsap_850,
Gorilla gorilla ENSGGOG00000016826 possible_ortholog 3 retrogenes
retro_ggor_125, retro_ggor_2141, retro_ggor_694,
Loxodonta africana ENSLAFG00000009851 ortholog_one2many 1 retrogene
retro_lafr_62,
Myotis lucifugus ENSMLUG00000001756 ortholog_one2one 1 retrogene
retro_mluc_324,
Macaca mulatta ENSMMUG00000022926 possible_ortholog 1 retrogene
retro_mmul_1064,
Monodelphis domestica ENSMODG00000011517 possible_ortholog 2 retrogenes
retro_mdom_150, retro_mdom_158,
Mustela putorius furo ENSMPUG00000015429 possible_ortholog 1 retrogene
retro_mputfur_180,
Mus musculus ENSMUSG00000062270 possible_ortholog 9 retrogenes
retro_mmus_1454, retro_mmus_1697, retro_mmus_176, retro_mmus_1771, retro_mmus_1825, retro_mmus_1833, retro_mmus_2500, retro_mmus_2612, retro_mmus_289,
Nomascus leucogenys ENSNLEG00000008678 possible_ortholog 3 retrogenes
retro_nleu_417, retro_nleu_445, retro_nleu_51,
Otolemur garnettii ENSOGAG00000006047 possible_ortholog 4 retrogenes
retro_ogar_1594, retro_ogar_2616, retro_ogar_2896, retro_ogar_50,
Pongo abelii ENSPPYG00000006703 possible_ortholog 4 retrogenes
retro_pabe_1046, retro_pabe_201, retro_pabe_2581, retro_pabe_695,
Pan troglodytes ENSPTRG00000007351 possible_ortholog 3 retrogenes
retro_ptro_2114, retro_ptro_47, retro_ptro_591,
Rattus norvegicus ENSRNOG00000014410 possible_ortholog 6 retrogenes
retro_rnor_1076, retro_rnor_2270, retro_rnor_2357, retro_rnor_374, retro_rnor_793, retro_rnor_980,
Sorex araneus ENSSARG00000004519 ortholog_one2one 1 retrogene
retro_sara_15,
Sarcophilus harrisii ENSSHAG00000018402 possible_ortholog 1 retrogene
retro_shar_393,
Sus scrofa ENSSSCG00000001769 possible_ortholog 1 retrogene
retro_sscr_93,
Ictidomys tridecemlineatus ENSSTOG00000013294 possible_ortholog 3 retrogenes
retro_itri_111, retro_itri_1545, retro_itri_1608,
Tupaia belangeri ENSTBEG00000001897 possible_ortholog 8 retrogenes
retro_tbel_1694, retro_tbel_1704, retro_tbel_4638, retro_tbel_518, retro_tbel_550, retro_tbel_69, retro_tbel_753, retro_tbel_76,
Tursiops truncatus ENSTTRG00000016606 possible_ortholog 1 retrogene
retro_ttru_472,
Vicugna pacos ENSVPAG00000008847 possible_ortholog 1 retrogene
retro_vpac_229,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_21 87.91 61.78
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2. retro_ocun_108 95.00 80.46
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Download FASTA sequences of all ENSOCUG00000015117 retrocopies