RetrogeneDB ID: | retro_cpor_153 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:40137469..40137908(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSCPOG00000001452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.06 % |
Parental protein coverage: | 98.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | KAKKEAPAPPKAEA-KAKALKAKKAVLKGIHSHKKKKIRTSPTFRRPKTLRLRRQPK-YPRKSAPRRNKL |
...KEAPA.PKA.A.KAKAL...KA.LK..HSHKKK.IR.SP.F.R...L.L.RQPK..P.....R.NKL | |
Retrocopy | QVQKEAPATPKAKA>KAKAL---KAMLKCVHSHKKK-IRRSPPFCRSNVLLLWRQPK<RP*RRTLRTNKL |
Parental | DHYAIIKFPL-TTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRL |
..YAIIKFP..T.ESA.......NTLV.IVDVKAN.HQIKQAVKKL.DIDVAKV.T..RPDGE.KAY..L | |
Retrocopy | NLYAIIKFPQ<TMESARRR--QDNTLVCIVDVKANEHQIKQAVKKLCDIDVAKVSTRTRPDGENKAYF*L |
Parental | AP-DYDALDVANKIGII |
A...Y..LDVA.K..II | |
Retrocopy | AS<YYCVLDVASKAEII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 156 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 251 .77 RPM |
SRP017611_liver | 0 .00 RPM | 164 .53 RPM |
SRP040447_lung | 0 .00 RPM | 302 .47 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 269 .76 RPM |