RetrogeneDB ID: | retro_cpor_966 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_37:14565652..14566022(-) | ||
Located in intron of: | ENSCPOG00000008912 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23A | ||
Ensembl ID: | ENSCPOG00000001452 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.02 % |
Parental protein coverage: | 79.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | HSHKKKKIRTSPTFRRPKTLRLRRQPKYPR-KSA-PRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIV |
H....KKI..SPTF......RL...PKYP..KSA.PRRNKLDHYAIIKFPL.TESAM.KIE.NNTLVF.V | |
Retrocopy | HPQLQKKIHSSPTFCSA*APRLQT*PKYPV<KSA<PRRNKLDHYAIIKFPLATESAMEKIEGNNTLVFTV |
Parental | DVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII |
DVKANKHQI.QAVKKL.D.DVAKVN.LIR.DG.KKA.V.LA.DYD..DVANK.GII | |
Retrocopy | DVKANKHQIIQAVKKLHDSDVAKVNILIRTDGKKKACVQLASDYDSSDVANKTGII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 156 .96 RPM |
SRP017611_kidney | 0 .00 RPM | 251 .77 RPM |
SRP017611_liver | 0 .00 RPM | 164 .53 RPM |
SRP040447_lung | 0 .00 RPM | 302 .47 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 269 .76 RPM |