RetrogeneDB ID: | retro_cpor_162 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:73774606..73775291(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2B | ||
Ensembl ID: | ENSCPOG00000006313 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.71 % |
Parental protein coverage: | 85.19 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KESRSASRSGSAHGSGKSARHT-PARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRR |
..SR.ASRSGS.H...KSARHT.P.RSRS.EDSR.SRSK.RSR.ESRSR.R.SSR.HYTRS.S.S..... | |
Retrocopy | EDSRFASRSGSVHKWRKSARHT<PVRSRSEEDSRHSRSKCRSRCESRSRFR-SSRKHYTRSQS*SCAR*C |
Parental | SRSRSYSRDYRRRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIV |
SRSR..S.DY.R.HSHSHSPMST...HVGN..NPDPNCCLG.F.LS..TT.RDLRE.FSKYG.IA..S.V | |
Retrocopy | SRSRPHS*DYHRHHSHSHSPMSTPMHHVGNQVNPDPNCCLGMFRLSSSTTGRDLREGFSKYGSIANMSTV |
Parental | YDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRR- |
.DQQSR.SRGFAFV.FENVDDAKEA.E.AN.MELDGRRIRVDFSITKRPHTPTPGIYMGR.TY.S...R. | |
Retrocopy | CDQQSRCSRGFAFVDFENVDDAKEAEEHAN*MELDGRRIRVDFSITKRPHTPTPGIYMGRLTYCSYTIR< |
Parental | DYYDRGYDRGYDDRDYYSRSYR |
D.YDRGY...YDD.DYYS.SYR | |
Retrocopy | DCYDRGYYCSYDDQDYYSWSYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 28 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 41 .77 RPM |
SRP017611_liver | 0 .00 RPM | 25 .07 RPM |
SRP040447_lung | 0 .00 RPM | 59 .98 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 25 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013345 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000003553 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006313 | 1 retrocopy |
retro_cpor_162 ,
|
Cavia porcellus | ENSCPOG00000012164 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |