>retro_cpor_197
GAACAAACGAGGCCCCTGAGACCTAGCTCACAGGATAAAACCCCACAGCAGAACTCAGAGTCAGCAAAGGCTAAGCCCCA
GGTGGTTGTGACTCCTGTGTTAATGTTTAAGCTGTCTGCCAACGCCCCCAAATTTTACCCATCAGGTTATTCTGCTTATA
CAGAATCCTATGAAGATGGTTGTGAGGATTATCCCACTCTATCAGACTATGTTCAAGAGTTTTTGAATCATCTTACAGAG
CAACCTGGCAGTTTTGAAACTGAAATTGAACAATTTGCAGAGACCCTGAATGGCTGGGTTACAACTGATGATGCTTTGCA
AGAACTTGTGGAACTCATCTACCAACAGGCCACATCTATCCCAAACTTCTCTTACATGGGAGCTCGCCTGTGTAATTACC
TGTCCCATCATCTGACAATTAGTCCACAGAGTGGCAACTTCCACCAATTGCTACTTCAAAGATGTCGGACTGAATATGAA
GTTAAAGATGAAGCTGCGAAAGGAGATGAAGTGACTCGAAAGTGATTTCATGCATTTGTACTCTTTCTGGGAAAACTTTA
TCTTAACCTGGAGATCAAGGGAACAAATGGGCAGGTTACGAGAGCAGATATTCTTCAAGTTGGTCTGCGGGAATTGTTGA
ATGCCTTGTTCTCTAATCCAATGGATGACAACTTAATTTGTGCAGTAAAATTATTAAAGTTACAAGACCAGTTTTGGAAG
ATGCTTGGAAAGAAAAATTAAAGACTGATATGGAAGAAATTATTCAGAGAATTGAAAATGTTGTCCTAGATGCAAACTGC
AGCATAGATGTAAAACAGATGCTCTTGAAGCTTGTAGAACTCCAGTCAAGTAACTGGGGCAGAGTACATGCAACTTTAAC
GTACAGAAAAGCAACACCTGAAAATGACCCTACCTACTTTATGAATGAACCAACATTTTATACATCTGATGGTGTACCTT
TCACTGCAGCAGATCCAGATTACCAAGAGAAGTATCAAGAGTTACTTGAAAGAGAGGACTTTTTTCCAGATTATGAAGAA
AATGGAACAGATTTATCAGGGGCTGGTGAGCCATACTTGGATGATATTGATGATGAGATGGACCCAGAAATTGAAGAAGC
TTATGAAAAGTCTTGTTTGGAATCAGAGCATAAGCGAAAACAG
ORF - retro_cpor_197 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
93.86 % |
Parental protein coverage: |
92.42 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EQTRPLRAPPSSQDKTPQQNSESAMAKPQVVVAPVLMSKLSANAPEFYPSGYSAYTESYEDGCEDYPTLS |
| EQTRPLR..PSSQDKTPQQNSESA.AKPQVVV.PVLM.KLSANAP.FYPSGYSAYTESYEDGCEDYPTLS |
Retrocopy | EQTRPLR--PSSQDKTPQQNSESAKAKPQVVVTPVLMFKLSANAPKFYPSGYSAYTESYEDGCEDYPTLS |
|
Parental | DYVQEFLNHLTEQPGSFETEIEQFAETLNGWVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHL |
| DYVQEFLNHLTEQPGSFETEIEQFAETLNGWVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHL |
Retrocopy | DYVQEFLNHLTEQPGSFETEIEQFAETLNGWVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHL |
|
Parental | TISPQSGNFRQLLLQRCRIHHKVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVG |
| TISPQSGNF.QLLLQRCR....VKD.AAKGDEVTRK.FHAFVLFLG.LYLNLEIKGTNGQVTRADILQVG |
Retrocopy | TISPQSGNFHQLLLQRCRTEYEVKDEAAKGDEVTRK*FHAFVLFLGKLYLNLEIKGTNGQVTRADILQVG |
|
Parental | LRELLNALFSNPMDDNLICAVKLLKL-TGSVLEDAWKEKLKTDMEEIIQRIENVVLDANCSRDVKQMLLK |
| LRELLNALFSNPMDDNLICAVKLLKL.T..VLEDAWKEKLKTDMEEIIQRIENVVLDANCS.DVKQMLLK |
Retrocopy | LRELLNALFSNPMDDNLICAVKLLKL<TRPVLEDAWKEKLKTDMEEIIQRIENVVLDANCSIDVKQMLLK |
|
Parental | LVELRSSNWGRVHATSTYREATPENDPNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEE |
| LVEL.SSNWGRVHAT.TYR.ATPENDP.YFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEE |
Retrocopy | LVELQSSNWGRVHATLTYRKATPENDPTYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFFPDYEE |
|
Parental | NGTDLSGAGDPYLDDIDDEMDPEIEEAYEKFCLESEHKRKQ |
| NGTDLSGAG.PYLDDIDDEMDPEIEEAYEK.CLESEHKRKQ |
Retrocopy | NGTDLSGAGEPYLDDIDDEMDPEIEEAYEKSCLESEHKRKQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
1 .32 RPM |
24 .50 RPM |
SRP017611_kidney |
1 .99 RPM |
42 .71 RPM |
SRP017611_liver |
1 .00 RPM |
39 .22 RPM |
SRP040447_lung |
2 .07 RPM |
37 .88 RPM |
SRP040447_skeletal_muscle |
2 .15 RPM |
36 .38 RPM |
Cavia porcellus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cpor_197 retrocopy.
Cavia porcellus was not studied using FANTOM5 data.
retro_cpor_197 was not experimentally validated.
Retrocopy orthology:
Cavia porcellus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
7 retrocopies.