>retro_itri_234
GAACAAAGGAGGCTCCAGAGAGCTCCACCTAGTTCACAGGATAAAATCTCACAGCAGAATTCGGAGTCAGCAATGGCTAA
ACCCTAGATGGTTGTTGGCTCCTGTGTTAATGCTTAACGGTCTGCAAATGCCCCTGAATTTTATCCATCAGGTTATTCTT
CTAATTATACAGAATCCTATGAGGGTGGTTATGAGTATTATCCCATTCTATCGGAATATGCTCAGGACTTTTTTGAATCA
TCTTATAGAGCGGCCTGACAATTTTGAAACTGAAATTGAACAGTTTGCAGAGACCCTGAATGGCTGAATTACAACAGATG
ATGATGCTTTGCAAGAACTTGTGGAACTCATCTACCTACAGGCTACATCTATCCCAAATTTCTCTTATATGGGAGCTCAC
CTGTCTCATCATCTGACAATAAGCCCACACAGTGGCAACTTCCGCCAATTGCTACTTCAAAGATGTCGCACAGAATATGA
AGCTAAAGATTAAGCTGCAAAAGGAGATGAAATGTCTTAATAACGATTTCATGTAATTGTACTCGTTCTGGGACAATCTT
ATCTTAGCTTGGAGATCAAGGGAACAAATGGACAGGTTACAAGAACAGATGTCCTTCAGGTTGGTCTGAGAGAATTGCTG
AATGCCCTCTTCTCTAATCCTATGAGTGACAACTTAATTAGTGCAGTAAAATTACTGAAGTTGACAGGGTCAGTTTTGGA
AGATGCCTGGAAGGAAAAAGGAAAAGACTGATATGGAATAAATTATTCAGAGAATTGAAAATGTTGTCCTAGATGCAAAC
TGCAGCAGAGATGTAAAACAGATGCTCTTGAAGTTTGCAGGACTCTGGCCAAGTAACTGGGGGTAGAGTTCATACAATTT
TAATATACAGAGAAGCATAACATGAAAATGATCTAACTGCTTTATGAATGAACCGACATTTTATACATCTGACGGTGTTC
CTTTCACTGCAGCTGACCCAGATGATCAAGAGAAATGTCAAGAATTACTTGAAAGAGAGGACTTGTTTCCAGATTATGAA
GAAAATGAAACAGATTTTATCAGGGGGTGGTGATCCATAGTTGGATGATATTGATGATGAGATTGAAGAAGCTTATGAAA
ACTTTTATTTGGAATCAGAGTGTAAGCGAAAACAG
ORF - retro_itri_234 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.1 % |
Parental protein coverage: |
81.46 % |
Number of stop codons detected: |
9 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | EQTRPLRAPPSSQDKISQQNSESAMAKPQVVVAPVLMSKLSANAPEFYPSGYSSNYTESYEDGCEDYPTL |
| EQ.R..RAPPSSQDKISQQNSESAMAKP..VV........SANAPEFYPSGYSSNYTESYE.G.E.YP.L |
Retrocopy | EQRRLQRAPPSSQDKISQQNSESAMAKP*MVVGSCVNA*RSANAPEFYPSGYSSNYTESYEGGYEYYPIL |
|
Parental | SEYVQDF-LNHLTEQPGSFETEIEQFAETLNGWVTTDD-ALQELVELIYQQATSIPNFSYMGARLCNYLS |
| SEY.QDF.LNHL.E.P..FETEIEQFAETLNG..TTDD.ALQELVELIY.QATSIPNFSYMGA.....LS |
Retrocopy | SEYAQDF>LNHLIERPDNFETEIEQFAETLNG*ITTDDDALQELVELIYLQATSIPNFSYMGA----HLS |
|
Parental | HHLTISPQSGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADIL |
| HHLTISP.SGNFRQLLLQRCRTEYE.KD.AAKGDE....RFH..VL.LG..YL.LEIKGTNGQVTR.D.L |
Retrocopy | HHLTISPHSGNFRQLLLQRCRTEYEAKD*AAKGDEMS**RFHVIVLVLGQSYLSLEIKGTNGQVTRTDVL |
|
Parental | QVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGK-TDMEEIIQRIENVVLDANCSRDVKQM |
| QVGLRELLNALFSNPM.DNLI.AVKLLKLTGSVLEDAWKEKGK.TDME.IIQRIENVVLDANCSRDVKQM |
Retrocopy | QVGLRELLNALFSNPMSDNLISAVKLLKLTGSVLEDAWKEKGK>TDME*IIQRIENVVLDANCSRDVKQM |
|
Parental | LLKLVELRSSNW-GRVHATSTYREATPEND-PNYFMNEPTFYTSDGVPFTAADPDYQEKYQELLEREDFF |
| LLK...L..SNW.GRVH....YREA..END..N.FMNEPTFYTSDGVPFTAADPD.QEK.QELLERED.F |
Retrocopy | LLKFAGLWPSNW>GRVHTILIYREA*HEND<SNCFMNEPTFYTSDGVPFTAADPDDQEKCQELLEREDLF |
|
Parental | PDYEENGTD-LSGGGDPYLDDIDDEMDPEIEEAYEKFCLESERKRKQ |
| PDYEEN.TD.LSGGGDP.LDDIDDE....IEEAYE.F.LESE.KRKQ |
Retrocopy | PDYEENETD>LSGGGDP*LDDIDDE----IEEAYENFYLESECKRKQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ictidomys tridecemlineatus was not studied using RNA-Seq expression data.
Ictidomys tridecemlineatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_itri_234 retrocopy.
Ictidomys tridecemlineatus was not studied using FANTOM5 data.
retro_itri_234 was not experimentally validated.
Retrocopy orthology:
Ictidomys tridecemlineatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
7 retrocopies.