RetrogeneDB ID: | retro_cpor_846 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:8045083..8045451(-) | ||
Located in intron of: | ENSCPOG00000011890 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000001818 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.28 % |
Parental protein coverage: | 98.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | LSRLLKEHQAKQNERKELQ-EKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQF |
LS.LLK.HQA.QN.RKELQ.E....EAITA.TCLTEAL.D.L...VAQAYMNQRKLDH.VKT...Q.A.F | |
Retrocopy | LSHLLKIHQATQNKRKELQ>EMWHQEAITAVTCLTEALGDQLYEDVAQAYMNQRKLDHKVKTQKGQVARF |
Parental | AKQTG-QWIGMVENFNQALKEI-GDVENWARSIELDM-RTIATALEY-VYKGQLQSAP |
A..TG.Q.IGMVENF...L..I....EN.A.S..LDM..TIA...E..VYKGQ.QS.P | |
Retrocopy | A*TTG<Q*IGMVENFTETLQKI>AYEENQAWSNKLDM<ATIAGTREQ<VYKGQQQSVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .58 RPM | 13 .86 RPM |
SRP017611_kidney | 0 .31 RPM | 32 .24 RPM |
SRP017611_liver | 0 .17 RPM | 17 .89 RPM |
SRP040447_lung | 0 .08 RPM | 27 .01 RPM |
SRP040447_skeletal_muscle | 0 .05 RPM | 31 .24 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011918 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008026 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000001818 | 2 retrocopies |
retro_cpor_1260, retro_cpor_846 ,
|
Macropus eugenii | ENSMEUG00000001570 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000010114 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000359 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010338 | 1 retrocopy |