RetrogeneDB ID: retro_meug_242

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_7272:104879..105254(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000001570
• Aliases: None
• Description: None

Sequence

>retro_meug_242
ATGCTGTCCCAGCTACTGAAGGAGCATCAAGTAAAGCAGAAGGAGCACAAGGAGCTGCAGGAGAGGAGGAGATGAGAGGT
CATCACGGCTGTGACCTGCCTGACAGAAGCATTGGTGGACCACCTCATTGTTGGTATGAGTGAAACCTATGTCAATCAGA
GGAAGCTGGACCATGATATGAAGATTCTCCAGGTCCAAGCCACATAGTTTGCCAAGCAGACAGGCCCATGGATTGGGATG
GTGGAAAACTTCAACCAGGTACTCAAGGAAATTGGAAATGTGGAGAATTGGGCTCAGAGCATTGAGCTGGACATGAGGAC
AATGGCCACAGGTCTGGGTTTTGTCTACAAGGAGCAGCTGCAGCTGGCCTCCTCC

Alignment

ORF - retro_meug_242 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.0 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MLSRLLKEHQAKQNERKELQEKRRREAIAAATCLTEALVDHLNVGVAQAYVNQRKLDHEVKTLQVQAAQF
          MLS.LLKEHQ.KQ.E.KELQE.RR.E.I.A.TCLTEALVDHL.VG....YVNQRKLDH..K.LQVQA..F
Retrocopy MLSQLLKEHQVKQKEHKELQERRR*EVITAVTCLTEALVDHLIVGMSETYVNQRKLDHDMKILQVQAT*F

Parental  AKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYKGQLQPAPS
          AKQTG.WIGMVENFNQ.LKEIG.VENWA.SIELDMRT.AT.L..VYK.QLQ.A.S
Retrocopy AKQTGPWIGMVENFNQVLKEIGNVENWAQSIELDMRTMATGLGFVYKEQLQLASS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_242 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_242 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011918	1 retrocopy	retro_btau_878,
Canis familiaris	ENSCAFG00000000061	1 retrocopy	retro_cfam_1156,
Callithrix jacchus	ENSCJAG00000008026	1 retrocopy	retro_cjac_148,
Cavia porcellus	ENSCPOG00000001818	2 retrocopies	retro_cpor_1260, retro_cpor_846,
Macropus eugenii	ENSMEUG00000001570	3 retrocopies	retro_meug_12, retro_meug_1307, retro_meug_242 ,
Mus musculus	ENSMUSG00000090247	1 retrocopy	retro_mmus_1761,
Oryctolagus cuniculus	ENSOCUG00000010114	1 retrocopy	retro_ocun_1023,
Otolemur garnettii	ENSOGAG00000010506	1 retrocopy	retro_ogar_786,
Pteropus vampyrus	ENSPVAG00000017748	1 retrocopy	retro_pvam_121,
Sus scrofa	ENSSSCG00000000359	1 retrocopy	retro_sscr_850,
Ictidomys tridecemlineatus	ENSSTOG00000010338	1 retrocopy	retro_itri_467,