RetrogeneDB ID: | retro_dnov_1064 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_142462:3194..3479(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLO1 | ||
Ensembl ID: | ENSDNOG00000019598 | ||
Aliases: | None | ||
Description: | glyoxalase I [Source:HGNC Symbol;Acc:4323] |
Percent Identity: | 79.38 % |
Parental protein coverage: | 51.1 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PQPAPGGL-TDEAAFSCCSDADP-STKDFLLQ-TMLQIKHPKKSLDFYAR-LGMTLIEKLDFPTMKFSLY |
PQ.A.G.L.TDEAA..CCS.ADP.STKDFLLQ.TML.IK.PK.SLDF..R.LGMTLIE.LDFPTMK.SLY | |
Retrocopy | PQLAAGSL<TDEAAVNCCSNADP>STKDFLLQQTMLRIKDPKTSLDFDTRILGMTLIEELDFPTMKCSLY |
Parental | FLAYEDKNDIPKDKNEKVAWLFSRKAT |
FLAYEDKNDIPKD.NEKVAW.FSRK.T | |
Retrocopy | FLAYEDKNDIPKD*NEKVAWFFSRKGT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .97 RPM | 33 .25 RPM |
SRP012922_cerebellum | 0 .69 RPM | 46 .74 RPM |
SRP012922_heart | 1 .39 RPM | 76 .80 RPM |
SRP012922_kidney | 0 .27 RPM | 47 .09 RPM |
SRP012922_liver | 0 .46 RPM | 71 .99 RPM |
SRP012922_lung | 0 .46 RPM | 22 .60 RPM |
SRP012922_quadricep_muscle | 1 .21 RPM | 98 .31 RPM |
SRP012922_spleen | 0 .57 RPM | 40 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012703 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000010050 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019598 | 6 retrocopies |
retro_dnov_1016, retro_dnov_1064 , retro_dnov_1411, retro_dnov_1759, retro_dnov_2560, retro_dnov_735,
|
Dipodomys ordii | ENSDORG00000006369 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005978 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024026 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007945 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000541 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000027778 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005821 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014386 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004664 | 1 retrocopy |