RetrogeneDB ID: | retro_rnor_1024 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 14:97413396..97413889(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Glo1 | ||
Ensembl ID: | ENSRNOG00000000541 | ||
Aliases: | None | ||
Description: | Lactoylglutathione lyase [Source:UniProtKB/Swiss-Prot;Acc:Q6P7Q4] |
Percent Identity: | 71.69 % |
Parental protein coverage: | 89.67 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | EPQPASSGLTDEAALSCCSDPDPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPSMKFSL-Y |
EPQ..SS.LTDE..LSCCSD....TK.FLLQQTMLR..DP..SL.F..R.LGLT.LQK.DFP.MKFSL.Y | |
Retrocopy | EPQLSSSSLTDEETLSCCSD*VSNTKHFLLQQTMLRVSDPE-SLSFHRRILGLT*LQKFDFPTMKFSL>Y |
Parental | FLAYEDKNDIPKDKTERTAWAFSRKATLELTHNWGTEDDETQSYHNGNSDPRGFGHIGIAVPDVYEACKR |
FL.Y..KNDIPKDK.ER.A..F.RKATLELTHNW..EDDETQSYH.G.SDP.GFGHI.IAV.D...ACK. | |
Retrocopy | FLVYQCKNDIPKDKNERIAKIFYRKATLELTHNWRSEDDETQSYHSGYSDPQGFGHIRIAVHDANGACKI |
Parental | FEELGVKFVKKPDDGKMKGLAFVQDP |
.EEL.V...KKP.DGKMKGLAFVQDP | |
Retrocopy | YEELVVTCMKKPKDGKMKGLAFVQDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 67 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 58 .83 RPM |
SRP017611_liver | 0 .00 RPM | 47 .13 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012703 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000010050 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019598 | 6 retrocopies | |
Dipodomys ordii | ENSDORG00000006369 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005978 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024026 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007945 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000541 | 2 retrocopies |
retro_rnor_1012, retro_rnor_1024 ,
|
Sus scrofa | ENSSSCG00000027778 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005821 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014386 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004664 | 1 retrocopy |