RetrogeneDB ID: | retro_dnov_2560 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_8565:39586..39985(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GLO1 | ||
Ensembl ID: | ENSDNOG00000019598 | ||
Aliases: | None | ||
Description: | glyoxalase I [Source:HGNC Symbol;Acc:4323] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 73.08 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAEPQPAPGGLTDEAAFSCCSDADPSTKDFLLQ-TMLQIKHPKKSLDFYAR-LGMTLIE-KLDFP-TMKF |
MAEP.P...GL.D..A..CCSD.DP.TKDFLLQ.T.LQIK.PKKSLD.Y.R.LGMTL.E.K..F....KF | |
Retrocopy | MAEPLPMAAGLMDKPALICCSDVDPRTKDFLLQQTVLQIKNPKKSLDIYDRILGMTLTE<KIRFS<SLKF |
Parental | SLYFLAYEDKNDIPKDKNEKVAWLFSRKATLELTHNWGTEDDATQSYHSGNSDPRG-FGHIGIAVPDV |
..YFLAYEDKNDIPK.KN..VAW.FS.K.T.ELTH.WGTE.DAT.S.H...SDP...FGHIGIA.PD. | |
Retrocopy | PPYFLAYEDKNDIPKGKNGRVAWVFSKK-TSELTHIWGTEEDATLS*HTVISDPGD<FGHIGIALPDM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 33 .25 RPM |
SRP012922_cerebellum | 0 .00 RPM | 46 .74 RPM |
SRP012922_heart | 0 .00 RPM | 76 .80 RPM |
SRP012922_kidney | 0 .00 RPM | 47 .09 RPM |
SRP012922_liver | 0 .00 RPM | 71 .99 RPM |
SRP012922_lung | 0 .00 RPM | 22 .60 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 98 .31 RPM |
SRP012922_spleen | 0 .00 RPM | 40 .29 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012703 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000010050 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019598 | 6 retrocopies |
retro_dnov_1016, retro_dnov_1064, retro_dnov_1411, retro_dnov_1759, retro_dnov_2560 , retro_dnov_735,
|
Dipodomys ordii | ENSDORG00000006369 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005978 | 1 retrocopy | |
Mus musculus | ENSMUSG00000024026 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007945 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000541 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000027778 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005821 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014386 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004664 | 1 retrocopy |