RetrogeneDB ID: | retro_dnov_1108 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_148309:1201..1697(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSDNOG00000025273 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUP62CL | ||
Ensembl ID: | ENSDNOG00000001467 | ||
Aliases: | None | ||
Description: | nucleoporin 62kDa C-terminal like [Source:HGNC Symbol;Acc:25960] |
Percent Identity: | 78.57 % |
Parental protein coverage: | 61.71 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | TPVMTYDKLEGLINKRSLELEDQEKHFLHQATQVNACDRTLIENGEQIYTLHGEVEKVKLDQKRLEQELD |
.P.MTY..LE.LINK.SLELEDQE.HFL.QATQVNA.DRTLIENGE.I.TLH.EVEKVKLDQ.RL.QELD | |
Retrocopy | SPAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITTLHREVEKVKLDQRRLDQELD |
Parental | FILSQQKKLIDPSIPLEESVKGQSGSIYLQHANKERERTYKLSENINVQLKRMAQDLKDIIEHLNTFGSP |
FILSQQK.L.D...PLEESVK.QSG.IYLQHA..ERE.TYKL.ENI..QLKRMAQDLKD.IEHLNT.G.. | |
Retrocopy | FILSQQKELEDLLSPLEESVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKDVIEHLNTCGGS |
Parental | -ADTMDL-LQQICKILNAHMDSLQWIDQ |
.ADT.D..LQQICKILNAHMDSLQW.DQ | |
Retrocopy | <ADTSDR<LQQICKILNAHMDSLQWVDQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 11 .47 RPM | 0 .00 RPM |
SRP012922_cerebellum | 27 .22 RPM | 0 .55 RPM |
SRP012922_heart | 2 .32 RPM | 0 .23 RPM |
SRP012922_kidney | 3 .83 RPM | 0 .55 RPM |
SRP012922_liver | 2 .94 RPM | 0 .00 RPM |
SRP012922_lung | 6 .72 RPM | 1 .07 RPM |
SRP012922_quadricep_muscle | 4 .15 RPM | 0 .17 RPM |
SRP012922_spleen | 10 .53 RPM | 0 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017963 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001467 | 1 retrocopy |
retro_dnov_1108 ,
|
Felis catus | ENSFCAG00000001984 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001005 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013865 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001787 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003649 | 1 retrocopy |