RetrogeneDB ID: retro_nleu_2076

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397326.1:1856412..1856742(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NUP62CL
• Ensembl ID: ENSNLEG00000013865
• Aliases: None
• Description: None

Sequence

>retro_nleu_2076
GCCAGCTCCGCCATGACCTATGCGCAGCTGGAGAGCCTGATCAATAAATGGAGCCTGGAGCTAGAGGACCAGGAGCGGCA
CTTCCTCCAGCAGGCCACCCAGGTCAACGCCTGGGACCGCACGCTGATCGAGAATGGAGAGAAGATCACCAGCTTGCACC
GCGAGGTGGAGAAGGTGAAGCTGGACCAGAAGAGGCTGGACCAGGAGCTCGACTTCATCCTGTCCCAGCAGAAGGAGCTG
GAAGACCTGCTGAGCCCACTGGAGGAGTTGGTCAAGGAGCAGAGCGGGACCATCTACCTGCAGCACGCGGACGAGGAGCG
TGAGAAAACC

Alignment

ORF - retro_nleu_2076 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70. %
• Parental protein coverage: 59.78 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ATPVMTYGHLEGLINEWNLELEDQEKYFLLQAAQVNAWDHTLIENGEMISILHGEVNKVKLDQKRLEQEL
          A...MTY..LE.LIN.W.LELEDQE..FL.QA.QVNAWD.TLIENGE.I..LH.EV.KVKLDQKRL.QEL
Retrocopy ASSAMTYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQEL

Parental  DFILSQQQELEFLLTYLEESTSDQSGLHYLQDADEEHMET
          DFILSQQ.ELE.LL..LEE....QSG..YLQ.ADEE...T
Retrocopy DFILSQQKELEDLLSPLEELVKEQSGTIYLQHADEEREKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_2076 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017963	1 retrocopy	retro_cfam_218,
Dasypus novemcinctus	ENSDNOG00000001467	1 retrocopy	retro_dnov_1108,
Felis catus	ENSFCAG00000001984	1 retrocopy	retro_fcat_120,
Macropus eugenii	ENSMEUG00000001005	1 retrocopy	retro_meug_1130,
Nomascus leucogenys	ENSNLEG00000013865	1 retrocopy	retro_nleu_2076 ,
Pteropus vampyrus	ENSPVAG00000001787	1 retrocopy	retro_pvam_694,
Vicugna pacos	ENSVPAG00000003649	1 retrocopy	retro_vpac_448,