RetrogeneDB ID: | retro_vpac_448 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_20349:2567..3215(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000012148 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUP62CL | ||
Ensembl ID: | ENSVPAG00000003649 | ||
Aliases: | None | ||
Description: | nucleoporin 62kDa C-terminal like [Source:HGNC Symbol;Acc:25960] |
Percent Identity: | 67.73 % |
Parental protein coverage: | 82.71 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PVTSSGISNPVPFTSTVDAIVTPVMTYGQLDALLNNWSLELEDQEKHFLHQATQINAWDHMLIENGEKIT |
P.T....S.P............P.MTY.QL..L.N.WSL.LEDQE.HFL.QATQ.NAWD..LIENGEKIT | |
Retrocopy | PATGAAASGP---GAAAGVTASPAMTYAQLESLINTWSL*LEDQERHFLQQATQVNAWDRTLIENGEKIT |
Parental | ALHGEVEKVKLNQKRLEQELDFILSQQKELEDLLIPLEGSVKGESGSAYPQHTDEEHERTYNVAENIDAQ |
.LH.EVEKVKL.QKRL.QELDFI..QQKELEDLL.PLE..VK..SG..Y.QH.DEE.E.TY..AENIDAQ | |
Retrocopy | TLHREVEKVKLDQKRLDQELDFIKNQQKELEDLLSPLEELVKEQSGTVYLQHADEEREKTYKLAENIDAQ |
Parental | LKQMAQDFKDIIEHLNTFGSPADPTDPLQQICKILNVQVDSLQWINQTSDMLQRKVEEVTEVFEHPCRKE |
LK.MAQD.KDIIEHLNT.G.PAD..DPLQQICKILN...DSLQWI.Q.S..LQRKVEEVT.V.E...RKE | |
Retrocopy | LKRMAQDLKDIIEHLNTSGGPADTSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEVTRVCEGR-RKE |
Parental | QERNVVIAFD |
QER...I.FD | |
Retrocopy | QERSFRITFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000017963 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000001467 | 1 retrocopy | |
Felis catus | ENSFCAG00000001984 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001005 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013865 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001787 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003649 | 1 retrocopy |
retro_vpac_448 ,
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