RetrogeneDB ID: | retro_dnov_1280 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_17561:9135..9911(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP5 | ||
Ensembl ID: | ENSDNOG00000004678 | ||
Aliases: | None | ||
Description: | FK506 binding protein 5 [Source:HGNC Symbol;Acc:3721] |
Percent Identity: | 68.42 % |
Parental protein coverage: | 57.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | CRDVVFIVGEGEDHDIPIGIDK-ALERMQREEHCILHLGPRYGFGEAGKPKFGIEPNAALTYEVTLKSFE |
CRDVVFIVGEGED..IPIGI.K..LE.MQ.E..CI..LGP.YGFGEAGK.KFGIE.NA...YEVTLK..E | |
Retrocopy | CRDVVFIVGEGEDRYIPIGINK<SLEEMQQEQ-CISYLGP*YGFGEAGKSKFGIEHNAEPIYEVTLKIIE |
Parental | KAKESWEMDTKEKLERAAIVKEKGTVYFKGGKYVQAMIQYGKIVSWLELEYGLSEKESKASDSFLLAAYL |
KA.ESWEM..K.KLE.AA.VK.K..V.FKGGKY.QA.IQYGK...WLE.EYGLSEKESKAS.SFLL.A.L | |
Retrocopy | KAQESWEMYIKAKLEQAAVVKKKRIVSFKGGKYMQAVIQYGKLIFWLEMEYGLSEKESKASKSFLLVAFL |
Parental | NLAMCYLKVREY-IKAVECCDKTLGLDSANEKGLYRRGEARLLMNEFEAAK-GDFEKVLEVNPQNKAARL |
NLAMC..K.REY...A.ECCDKTLGLDSANEK.L.RRGEA.L...E.E.AK.GDFEK..EV.PQNK.ARL | |
Retrocopy | NLAMCHVKLREY<LRAAECCDKTLGLDSANEKDLCRRGEAQLFTHESESAK<GDFEKAFEVIPQNKGARL |
Parental | QISVCQKKAKEHNERDRKTYANMFKKFAEQDAKQEA-SKTMGKNTLEEVTNEKEAE |
QIS..QKKAK.H...D...Y.NMFKKF.EQDAK.EA..KT.G....E..T.....E | |
Retrocopy | QISTFQKKAKKH-KQDCRIYPNMFKKFTEQDAKEEA<KKTLGGVSSEKGTASQTME |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 41 .42 RPM |
SRP012922_cerebellum | 0 .00 RPM | 22 .96 RPM |
SRP012922_heart | 0 .00 RPM | 56 .15 RPM |
SRP012922_kidney | 0 .00 RPM | 60 .78 RPM |
SRP012922_liver | 0 .00 RPM | 41 .02 RPM |
SRP012922_lung | 0 .00 RPM | 120 .04 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 116 .14 RPM |
SRP012922_spleen | 0 .00 RPM | 76 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000004678 | 1 retrocopy |
retro_dnov_1280 ,
|
Dasypus novemcinctus | ENSDNOG00000005868 | 16 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011244 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018432 | 1 retrocopy | |
Homo sapiens | ENSG00000096060 | 4 retrocopies |