RetrogeneDB ID: | retro_dnov_1468 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_21014:28623..29303(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZMYND19 | ||
Ensembl ID: | ENSDNOG00000006644 | ||
Aliases: | None | ||
Description: | zinc finger, MYND-type containing 19 [Source:HGNC Symbol;Acc:21146] |
Percent Identity: | 84.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MTDFKLGILLLGRVAG-KTKYTLIDEQDIPLVESYSFEARMEVDADGNGAKIFA-YAFDKNRGRGSGRLL |
MTDFKLGI..LG.VAG.KTKYTLIDEQDIPLVESYS.EARMEVDADGNGAKIF..YAFDKN.G..SG.LL | |
Retrocopy | MTDFKLGIVRLGQVAG<KTKYTLIDEQDIPLVESYSLEARMEVDADGNGAKIFE>YAFDKN*GWESGLLL |
Parental | HELLWERHRGGIAPGFQVVHLNAVTVDNRLDNLQLVPWGW-PKAEETSSKQREQSLYWLAIQQLPTDPLE |
HELLW..HRGGI...FQV.HLNAVTVDNRLDNLQLV.WGW..KAEETSSKQ.EQSLYWLAIQQLP.DPLE | |
Retrocopy | HELLWSWHRGGITSSFQVLHLNAVTVDNRLDNLQLVQWGWWSKAEETSSKQQEQSLYWLAIQQLPSDPLE |
Parental | EQFPVLNVARYYN-ANGDVVEEEEGSCTYYECRYPPCTAMEKQLREFNICGRCQVARYCGSQCQQKDWPA |
E.FPVLNVARYY..ANGDVVEEEEGSCTYYEC.YPP.T.MEKQL.EFNIC.RCQVARYCGSQCQQKDWP. | |
Retrocopy | EPFPVLNVARYYK<ANGDVVEEEEGSCTYYECCYPPYTVMEKQLHEFNICRRCQVARYCGSQCQQKDWPD |
Parental | HKKHCREKKRPFQHELEPER |
H.KHC.EKK.PFQHELE.ER | |
Retrocopy | H*KHCHEKKCPFQHELELER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 5 .25 RPM |
SRP012922_cerebellum | 0 .14 RPM | 6 .74 RPM |
SRP012922_heart | 0 .00 RPM | 1 .86 RPM |
SRP012922_kidney | 0 .00 RPM | 2 .46 RPM |
SRP012922_liver | 0 .00 RPM | 2 .01 RPM |
SRP012922_lung | 0 .00 RPM | 3 .21 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 2 .60 RPM |
SRP012922_spleen | 0 .00 RPM | 5 .95 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000006644 | 2 retrocopies |
retro_dnov_1389, retro_dnov_1468 ,
|
Dipodomys ordii | ENSDORG00000008360 | 1 retrocopy | |
Equus caballus | ENSECAG00000012412 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005023 | 1 retrocopy | |
Homo sapiens | ENSG00000165724 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006875 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011727 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019610 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017172 | 1 retrocopy | |
Mus musculus | ENSMUSG00000026974 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009236 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000010812 | 1 retrocopy |